Locus 7127

Sequence ID 3R_DroMel_CAF1
Location 18,770,334 – 18,770,435
Length 101
Max. P 0.950210
window11529

overview

Window 9

Location 18,770,334 – 18,770,435
Length 101
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 82.02
Mean single sequence MFE -38.92
Consensus MFE -26.94
Energy contribution -26.98
Covariance contribution 0.04
Combinations/Pair 1.24
Mean z-score -2.38
Structure conservation index 0.69
SVM decision value 1.40
SVM RNA-class probability 0.950210
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18770334 101 - 27905053
AGAUACAGAUACAGA------UUCAGAUGCAGUUUCAGGUUCAGUUUCGGCGUUCUGUGGCCGCUGGGAA-------CUGGAGGCAAGUGGAAAAGCUUGCUACGCGGCUGAAU
..............(------(((((.(((.........(((((((((((((..(...)..)))).))))-------)))))(((((((......)))))))..))).)))))) ( -33.30)
>DroSec_CAF1 28589 107 - 1
AGAUACAGAUUCAGAUGCAGUUUCAGUCGCAGUUUCAGGUUCAGUUUCGGCGUUCUGUGGCCGCUGGGAG-------CUGGAGGCAAGUGGAAAAGCUUGCUACGCGGCUGAAU
.....................(((((((((.........(((((((((((((..(...)..)))).))))-------)))))(((((((......)))))))..))))))))). ( -38.70)
>DroSim_CAF1 29286 107 - 1
AGAUACAGAUUCAGAUGCAGUUUCGGUCGCAGUUUCAGGUUCAGUUUCGGCGUUCUGUGGCCGCUGGGAG-------CUGGAGGCAAGUGGAAAAGCUUGCUACGCGGCUGAAU
.....................(((((((((.........(((((((((((((..(...)..)))).))))-------)))))(((((((......)))))))..))))))))). ( -38.00)
>DroEre_CAF1 28892 113 - 1
AGAUACAGACUCAGAUGCAGUUUGAGCUGCAAUUUCAGGAUCAGUUUCAGU-UGCUGUGGCCGCUGGUAGCUGGUAGCUGGAGGCAAGUGGAAAAACUUGCUGCGCGGCUGAAU
.....(((((((....).))))))((((((...(((((.((((((((((((-.((....)).))))).)))))))..)))))(((((((......)))))))..)))))).... ( -44.70)
>DroYak_CAF1 23853 101 - 1
AGUUGCAGAUUCAGAUGCAGUUUCAGUUGC------------AGUUUCAGU-UGCUGUGGCCGCUGGUAGCUGUUUGCUGGAGGCAAGUGGAAAAGCUUGCUACGCGGCUGAAU
........((((((.(((...((((((.((------------(((((((((-.((....)).))))).))))))..))))))(((((((......)))))))..))).)))))) ( -39.90)
>consensus
AGAUACAGAUUCAGAUGCAGUUUCAGUUGCAGUUUCAGGUUCAGUUUCGGCGUUCUGUGGCCGCUGGGAG_______CUGGAGGCAAGUGGAAAAGCUUGCUACGCGGCUGAAU
.....................(((((((((..............((((((((.........))))))))...........(.(((((((......))))))).)))))))))). (-26.94 = -26.98 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:03 2006