Locus 7125

Sequence ID 3R_DroMel_CAF1
Location 18,769,281 – 18,769,372
Length 91
Max. P 0.609739
window11526

overview

Window 6

Location 18,769,281 – 18,769,372
Length 91
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 84.69
Mean single sequence MFE -26.72
Consensus MFE -18.50
Energy contribution -19.75
Covariance contribution 1.25
Combinations/Pair 1.10
Mean z-score -2.63
Structure conservation index 0.69
SVM decision value 0.15
SVM RNA-class probability 0.609739
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18769281 91 - 27905053
ACCCGCCCACCUGGCGCACUAUCUGCAUUUCAAUGCAUUUUAAAAUAUGCAUUGCGGGCGGUGGAUGGGAAAACC-----AAGAAAAACUAACCAA-----
..((((((.......(((.....)))....((((((((........)))))))).))))))(((.(((.....))-----)((.....))..))).----- ( -28.40)
>DroSec_CAF1 27618 91 - 1
ACCCGCCCACCUGGCGCGCUAUCUGCAUUUCAAUGCAUUUUAAAAUAUGCAUUGCGGGCGGUGGAUGGGAAAACC-----AAGAAAAACUAACCCA-----
.((((.(((((..((.(((.....))....((((((((........)))))))).).))))))).))))......-----................----- ( -29.40)
>DroSim_CAF1 28288 91 - 1
ACCCGCCCACCUGGCGCGCUAUCUGCAUUUCAAUGCAUUUUAAAAUAUGCAUUGCGGGCGGUGGAUGGGAAAACC-----AAGAAAAACUAACCAA-----
.((((.(((((..((.(((.....))....((((((((........)))))))).).))))))).))))......-----................----- ( -29.40)
>DroEre_CAF1 27759 87 - 1
----GCCCACCUGGCGCGCUAUCUGCAUUUCAAUGCAUUUUAAAAUAUGCAUUGCGCGAUGGGGAUGGGAAAACC-----AAGAAAAACUAACCAA-----
----.(((((((.((((((.....))....((((((((........)))))))).))).).))).))))......-----................----- ( -26.40)
>DroYak_CAF1 22646 91 - 1
ACCUGCCCACCUGGCGCGCUAUCUGCAUUUCAAUGCAUUUUAAAAUAUGCAUUGCGGGCGGUGGCUGGGAAAACC-----AAGAAAAACUAACCAA-----
.........((..((.((((..(((((.....((((((........)))))))))))..))))))..))......-----................----- ( -27.60)
>DroAna_CAF1 22548 95 - 1
------CCCCGUGCGGCGCUAUCUGCAUUUCAAUGCAUUUUAAAUUAUGCAUAGCGGGCGAGAGAGGAAAGAAUCUAAAAAAGGAAAAGAAACCCAAACGG
------.(((((((((......))))......((((((........)))))).)))))((..(((........)))......((.........))...)). ( -19.10)
>consensus
ACCCGCCCACCUGGCGCGCUAUCUGCAUUUCAAUGCAUUUUAAAAUAUGCAUUGCGGGCGGUGGAUGGGAAAACC_____AAGAAAAACUAACCAA_____
.....((((.(((.(((((.....))....((((((((........))))))))...))).))).))))................................ (-18.50 = -19.75 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:00 2006