Locus 7124

Sequence ID 3R_DroMel_CAF1
Location 18,768,622 – 18,768,721
Length 99
Max. P 0.605683
window11525

overview

Window 5

Location 18,768,622 – 18,768,721
Length 99
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 90.11
Mean single sequence MFE -21.33
Consensus MFE -17.73
Energy contribution -17.37
Covariance contribution -0.36
Combinations/Pair 1.10
Mean z-score -1.82
Structure conservation index 0.83
SVM decision value 0.15
SVM RNA-class probability 0.605683
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18768622 99 - 27905053
CGGCACAGCAAUUUCCCAGCAAUUUUGCUG-----------------AAAAAAUGACAAAAAGCGUACGAGUGAAAUGUCAUUCAAGCAGCGAAUGCCAUUUACCCGAAACCCCAA
.((((..((.........))...(((((((-----------------....(((((((....((......))....)))))))....))))))))))).................. ( -24.00)
>DroSec_CAF1 26971 99 - 1
CGGCACAGCAAUUUCUCAGCAAUUUCGCAG-----------------AAAAAAUGACAAAAAGCGUACGAGUGAAAUGUCAUUCAAGCAGCGAAUGCCAUUUACCCGAAACCCCAA
.((((..((.........))...(((((.(-----------------....(((((((....((......))....)))))))....).))))))))).................. ( -20.80)
>DroSim_CAF1 27636 99 - 1
CGGCACAGCAAUUUCCCAGCAAUUUCGCAA-----------------AAAAAAUGACAAAAAGCGUACGAGUGAAAUGUCAUUCAAGCAGCGAAUGCCAUUUACCCGAAACCCCAA
.((((..((.........))...(((((..-----------------....(((((((....((......))....)))))))......))))))))).................. ( -20.40)
>DroEre_CAF1 27165 99 - 1
CGGCACAGCAAUUUCCCAGCAAUUUCGCAG-----------------AAAAAAUGACAAAAAGCGUACGAGUGAAAUGUCAUUCAAGCAGCGAAUGCCAUUUACCCGAAACCCCAA
.((((..((.........))...(((((.(-----------------....(((((((....((......))....)))))))....).))))))))).................. ( -20.80)
>DroYak_CAF1 21946 101 - 1
CGGCACAGCAAUUUCCCAGCAAUUUCGCAGG---------------AAAAAAAUGACAAAAAGCGUACGAGUGAAAUGUCAUUCAAGCAGCGAAUGCCAUUUACCCGAAACCCCAA
.((((..((..(((((..((......)).))---------------)))..(((((((....((......))....)))))))......))...)))).................. ( -22.50)
>DroAna_CAF1 21773 116 - 1
CGGCACAGCAAUUUCCCAGCAAUUUUGCCAGAGAGAGAGUACAAAAAAAGAAAUGACAAAAGCCAUACGAGUGAAAUGUCAUUCAAGCAGCGAAUGCCAUUUACCCAAAACUCUAA
.(((...((..(((((..(((....)))..).))))..))........(....).......)))....((((.(((((.(((((.......))))).))))).......))))... ( -19.50)
>consensus
CGGCACAGCAAUUUCCCAGCAAUUUCGCAG_________________AAAAAAUGACAAAAAGCGUACGAGUGAAAUGUCAUUCAAGCAGCGAAUGCCAUUUACCCGAAACCCCAA
.((((..((.........))...(((((........................(((........)))..((((((....)))))).....))))))))).................. (-17.73 = -17.37 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:59 2006