| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,765,775 – 18,765,887 |
| Length | 112 |
| Max. P | 0.740365 |
| Location | 18,765,775 – 18,765,887 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 78.07 |
| Mean single sequence MFE | -31.70 |
| Consensus MFE | -17.89 |
| Energy contribution | -19.46 |
| Covariance contribution | 1.57 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.740365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18765775 112 + 27905053 CACUUAAAGGCACUCACCUUUUGCUCGGUCGUGAGGUGACUA--GCUAAGGUAACUACUGCUUUUCUGAAGCGGUAAUUAAAAGCAAUUUGUAAGUUAAGCCCGAGCAGAGAA-A---- ..((((((((......)))))(((((((.(...((....)).--(((....(((.(((((((((...))))))))).)))..)))..............).))))))))))..-.---- ( -32.30) >DroSec_CAF1 24159 111 + 1 CACUUAAA----CUCACCUUUUGCUCGGUCGUUAGGUGACUAGAGCUAAGCUAACUACCGCUUUUCUGAAGCGGUAAUUAAAAGCAAUUUGUAAGUUAAGUCCGAGCAGAGAACA---- ........----......((((((((((.(.((((....)))).(((....(((.(((((((((...))))))))).)))..)))..............).))))))))))....---- ( -35.10) >DroSim_CAF1 24791 115 + 1 CACUUAAAGGCACUCACCUUUUGCUCGGUGGUGAGGUGACUAGAGCUAAGCUAACUACCGCUUUUCUGAAGCGGUAAUUAAAAGCAAUUUGUAAGUUAAGCCCGAGCAGAGAACA---- ..((((((((......)))))(((((((((((.((....))...)))).(((((((((((((((...)))))))))....(((....)))....))).)))))))))))))....---- ( -36.50) >DroEre_CAF1 24352 117 + 1 CACUUAAAGCCACUCACCUUUUGCUCGGUCGUGAGGUGACUA--GCUUAGCUAACUACCGCUUUUCUGGAGCGGUAAUUAAAAGCAAUUUGUAAGUUAAGCCGGAGCACAGCAGAGCAG .....................(((((.((.(((((....)).--((((((((.((((((((((.....))))))))....(((....))))).)))))))).....))).)).))))). ( -36.70) >DroAna_CAF1 18696 97 + 1 UGGUAAAAAGCCCUCACCUUUUC----------------------CUAAGCUUUCUGCCGGUCGUCAGAGGCGGUAAUUAAAAGCAAUUUGUAAGUUAAGCCGGAGCACAAUAAGCCAC ((((.(((((.......))))).----------------------....((((((((.(....).))))(((..(((((.(((....)))...))))).))).)))).......)))). ( -17.90) >consensus CACUUAAAGGCACUCACCUUUUGCUCGGUCGUGAGGUGACUA__GCUAAGCUAACUACCGCUUUUCUGAAGCGGUAAUUAAAAGCAAUUUGUAAGUUAAGCCCGAGCAGAGAACA____ ..................(((((((((((((.....)))))...(((.((((...((((((((.....)))))))).......((.....)).)))).)))..))))))))........ (-17.89 = -19.46 + 1.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:57 2006