Locus 7121

Sequence ID 3R_DroMel_CAF1
Location 18,765,100 – 18,765,191
Length 91
Max. P 0.897296
window11521

overview

Window 1

Location 18,765,100 – 18,765,191
Length 91
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 74.53
Mean single sequence MFE -20.01
Consensus MFE -13.09
Energy contribution -13.59
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.65
SVM decision value 1.00
SVM RNA-class probability 0.897296
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18765100 91 - 27905053
-CCCCCU----UUCCUUUUUCC------AC--CCAAAAAUUGUUCGCAUGGCGGCCUUUGU--------------GGCCGUAAACAUUCUGAUAUCUUCGGAUAACUUUCGCCAGUCA
-......----...........------..--.............((.((((((((.....--------------)))).............((((....))))......)))))).. ( -19.90)
>DroSec_CAF1 23484 91 - 1
-CCUCCU----UUCCUUUUUCC------AA--CCAAAAAUUGUACGCAUGGCGGCCUUUGU--------------GGCCGUAAACAUUCUGAUAUCUUCGGAUAACUUUCGCCAGUCA
-......----...........------..--.............((.((((((((.....--------------)))).............((((....))))......)))))).. ( -19.90)
>DroSim_CAF1 24120 91 - 1
-CCUCCU----UUCCUUUUUCC------AC--CCAAAAAUUGUUCGCAUGGCGGCCUUUGU--------------GGCCGUAAACAUUCUGAUAUCUUCGGAUAACUUUCGCCAGUCA
-......----...........------..--.............((.((((((((.....--------------)))).............((((....))))......)))))).. ( -19.90)
>DroEre_CAF1 23679 96 - 1
GCCGCCGUCGCCUCCUCCUUCC------GG--CCAAAAAUGUUUCGCAUGGCGGCCUUUGU--------------GGCCGUAAACACUCUGAUAUCUUUGGAUAACUUUCGCCAGUCA
((((((...(((..........------))--).....(((.....))))))))).....(--------------(((.(.......((..(.....)..)).......))))).... ( -23.14)
>DroYak_CAF1 18356 91 - 1
-------------CCUCCUUUCACACCCAACCCAAAAAAUGUUUCGCAUGACGGCCUUUGU--------------GGCCGUAAACAUUCGGAUAUCUUUGGUUAACUUUCGCCAGUCA
-------------..................(((((..(((((.((.(((((((((.....--------------))))))...))).))))))).)))))................. ( -18.60)
>DroAna_CAF1 18198 93 - 1
-ACCC------------UUUCC------AC--CAAAUUAGGCUC----CGGCGGCCUUUGUGCCAAUCGUUUUCUGGCCAUAAACAUUUUGAUAUCUUUUGAUAACUUUCGCCAGUCA
-....------------.....------..--.......((((.----.(((((((.....((.....)).....)))).............((((....))))......))))))). ( -18.60)
>consensus
_CCCCCU____UUCCUUUUUCC______AC__CCAAAAAUGGUUCGCAUGGCGGCCUUUGU______________GGCCGUAAACAUUCUGAUAUCUUCGGAUAACUUUCGCCAGUCA
................................................((((((((...................)))).............((((....))))......)))).... (-13.09 = -13.59 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:56 2006