Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,524,580 – 2,524,699 |
Length | 119 |
Max. P | 0.646760 |
Location | 2,524,580 – 2,524,699 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.98 |
Mean single sequence MFE | -37.38 |
Consensus MFE | -33.14 |
Energy contribution | -33.22 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.06 |
Mean z-score | -1.33 |
Structure conservation index | 0.89 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.646760 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2524580 119 - 27905053 GGCAUUAUUCGAGUCGCCGGCUGGACAGUGGUUACUCCGCACUGUAAUCGACAUAAACUAUUUCCAGCUUAACCCUUGGUAAAGUGCGCUCGC-CGAUGAUUAGGCCAAACAAGUGCCAG ((((((....(((.(((((((((((..((((.....))))..(((.....))).........)))))))..(((...)))...).))))))((-(........)))......)))))).. ( -37.20) >DroSec_CAF1 53960 119 - 1 GGCAUUAUUCGAGUCGCCGGCUGGACAGCGGUUACUCCGCACUGUAAUCGCCAUAAACUAUUUCCAGCUUAACCCUUGGCAAAGUGCGCUCGC-CGAUGAUUAGGCCAAACAAGUGCCAG ((((((....(((.(((.(((((((..((((((((........))))))))...........))))))).....(((....))).))))))((-(........)))......)))))).. ( -38.92) >DroSim_CAF1 52888 119 - 1 GGCAUUAUUCGAGUCGCCGGCUGGACAGCGGUUACUCCGCACUGUAAUCGCCAUAAACUAUUUCCAGCUUAACCCUUGGCAAAGUGCGCUCGC-CGAUGAUUAGGCCAAACAAGUGCCAG ((((((....(((.(((.(((((((..((((((((........))))))))...........))))))).....(((....))).))))))((-(........)))......)))))).. ( -38.92) >DroEre_CAF1 53707 119 - 1 GGCUUUAUUCGAGUCGCCGGCUGGACAGCGGUUACUCCGCACUGUAAUCGCCAUAAACUAUUUCCAGCUUAACCCUUGGCAAAGUGCGCUCGC-CAAUGAUUAGGCCAAACAAGUGCCAG (((.......(((.(((.(((((((..((((((((........))))))))...........))))))).....(((....))).))))))((-(........))).........))).. ( -34.82) >DroYak_CAF1 55235 120 - 1 GGCAUUAUUCGAGUCGCCAGCUGGACAGCGGUUACUCCGCUUUGUAAUCGCCAUAAACUAUUUCCAGCUUAACCCUUGGCAAAGUGCGCUCGCCCGAUGAUUAGGCCAAACAAGUGCCAG ((((((....(((.(((.(((((((..((((((((........))))))))...........))))))).....(((....))).))))))(((..(...)..)))......)))))).. ( -37.02) >consensus GGCAUUAUUCGAGUCGCCGGCUGGACAGCGGUUACUCCGCACUGUAAUCGCCAUAAACUAUUUCCAGCUUAACCCUUGGCAAAGUGCGCUCGC_CGAUGAUUAGGCCAAACAAGUGCCAG ((((((....(((.(((.(((((((..((((((((........))))))))...........))))))).....(((....))).))))))((.(........)))......)))))).. (-33.14 = -33.22 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:00 2006