Locus 7119

Sequence ID 3R_DroMel_CAF1
Location 18,759,891 – 18,759,983
Length 92
Max. P 0.660480
window11518

overview

Window 8

Location 18,759,891 – 18,759,983
Length 92
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 78.12
Mean single sequence MFE -33.24
Consensus MFE -15.88
Energy contribution -16.04
Covariance contribution 0.16
Combinations/Pair 1.21
Mean z-score -1.95
Structure conservation index 0.48
SVM decision value 0.27
SVM RNA-class probability 0.660480
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18759891 92 - 27905053
UUGUUUGCACUUGAUGAUGCCCGGUUGACAGCCACGCCCACGUGGAUGCCAACGCC------CCCAAC---CUAUCGCUGCUACACAGAGCUGCAGACAUU
.(((((((((((..((..((...((((.((.(((((....))))).)).))))((.------......---.....)).))..))..))).)))))))).. ( -26.80)
>DroSim_CAF1 18949 98 - 1
UUGUUUGCACUUGAUGAUGCCGGGUUGACAGCCACGCCCACGUGGAUGCCAACGCCCCCGCCCCCGAC---CCAUUGCUGCUCCAUCGAGCUGCAGACAUU
.(((((((((((((((..((.((((((.((.(((((....))))).)).....((....))...))))---))......))..))))))).)))))))).. ( -36.80)
>DroEre_CAF1 18537 92 - 1
UUGUUUGCACUUGAUGAUGCCGGGUUGACAGCCACGCCCACGUGGCAAC------CCCCGCCCCCGCC---CCAUCGCUGCUCCACCGAGCUGCAGACAUU
.((((((((...((((..((.(((.((...((((((....))))))...------...)).))).)).---.))))...((((....)))))))))))).. ( -35.10)
>DroYak_CAF1 12896 98 - 1
UUGUUUGCACUUGAUGAUGCCGGGUUGACAGCCACGCCCACGUGGCAGCCAACGCCCCCGCCCACGCC---CCAUCGCUGCUACAUCGAGUUGCAGACAUU
.(((((((((((((((..((.((((.(...((((((....)))))).((....))..).))))..((.---.....)).))..))))))).)))))))).. ( -38.80)
>DroAna_CAF1 12840 101 - 1
UUGUUUGCACUUGAUGAUGCCGGGGUGACAGCCACGCCCACAUCAACAUCGACGCCAAUGUCAACGCCCCCCUUUUGGCAAGUCAGCGGGUUGAAAGCAUU
.....(((...((.(((((..((((((.....))).))).))))).))(((((.((..((.(...(((........)))..).))..)))))))..))).. ( -28.70)
>consensus
UUGUUUGCACUUGAUGAUGCCGGGUUGACAGCCACGCCCACGUGGAAGCCAACGCCCCCGCCCCCGCC___CCAUCGCUGCUACACCGAGCUGCAGACAUU
.((((((((((((.((..((.((((((.....)).))))..((....))..............................))..)).)))).)))))))).. (-15.88 = -16.04 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:53 2006