Locus 7118

Sequence ID 3R_DroMel_CAF1
Location 18,756,057 – 18,756,147
Length 90
Max. P 0.517667
window11517

overview

Window 7

Location 18,756,057 – 18,756,147
Length 90
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 84.12
Mean single sequence MFE -19.03
Consensus MFE -13.43
Energy contribution -13.07
Covariance contribution -0.36
Combinations/Pair 1.31
Mean z-score -1.89
Structure conservation index 0.71
SVM decision value -0.03
SVM RNA-class probability 0.517667
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18756057 90 - 27905053
GCUGCCAAUUUGCGCCGCCAUUAUUGAAGUUUUU-CAUA--CAUUUCGGUGACCACACUUCCGGCCGCU--------------GCAGCAUCUUGUCUUCUACUUUUC
(((((......((((((........(((((...(-(((.--.......))))....)))))))).))).--------------)))))................... ( -19.50)
>DroSec_CAF1 14769 88 - 1
GCUGCCAAUUUGCGCCGCCAUUAUUGAAGUUUUU-CAUA--CAUUUCGGUGACCA--CUUCCGGCCACU--------------GCAGCAUCUUGUCUUUUCCUUUUC
(((((.....((.((((........(((((...(-(((.--.......))))..)--))))))))))..--------------)))))................... ( -19.10)
>DroSim_CAF1 14863 88 - 1
GCUGCCAAUUUGCGCCGCCAUUAUUGAAGUUUUU-CAUA--CAUUUCGCUGACCA--CUUCCGGCCACU--------------GCAGCAUCUUGUCUUUUCCUUUUC
(((((.....((.((((........(((((...(-((..--........)))..)--))))))))))..--------------)))))................... ( -16.50)
>DroEre_CAF1 14735 86 - 1
GCUGCCAAUUUGCGCCGCCAUUAUUGAAGUUUUU-CAUA--CAUUUCGGUGACCA--CUUCCGGCCACC--------------ACAGCAUCUUGUCUU--CCUUGUC
((((......((.((((........(((((...(-(((.--.......))))..)--))))))))))..--------------.))))..........--....... ( -15.50)
>DroYak_CAF1 8962 88 - 1
GCUGCCAAUUUGCGCCGCCAUUAUUGAAGUUUUU-CAUACACAUUUCGGUGACCA--UUUCCGGCGACC--------------GCAGCAUCUUGUCUU--CCUUUUC
(((((.......(((((...((((((((((....-.......))))))))))...--....)))))...--------------)))))..........--....... ( -20.00)
>DroAna_CAF1 8999 95 - 1
GCUGCCAAUUUUCGCCGCCAUUAUUGAGGUUUUUCCAUG--CAUUUCAGCGACCA--CUUCCGGUCGCUCCUACCCCCCCUCAGCAGCAUCUUGUCUUU--------
(((((........(((..((....)).))).........--......(((((((.--.....)))))))..............)))))...........-------- ( -23.60)
>consensus
GCUGCCAAUUUGCGCCGCCAUUAUUGAAGUUUUU_CAUA__CAUUUCGGUGACCA__CUUCCGGCCACU______________GCAGCAUCUUGUCUUU_CCUUUUC
(((((....................(((((............)))))((((.((........)).))))..............)))))................... (-13.43 = -13.07 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:52 2006