Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,753,280 – 18,753,394 |
Length | 114 |
Max. P | 0.598753 |
Location | 18,753,280 – 18,753,394 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 94.59 |
Mean single sequence MFE | -24.26 |
Consensus MFE | -22.90 |
Energy contribution | -23.34 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.08 |
Structure conservation index | 0.94 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598753 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18753280 114 + 27905053 UUUUUUUUUGGCAUAAAAACUUAUUGACAUUUCUCUGAGUGCAAGUGCCAUUCGAUUCCGGACCGGAAAGCCUUUUCGUGUUCAUCCGUUCAAUCAACUCAAUUAAUAUUGAUG ........((((((....(((((..((....))..)))))....))))))...((((.((((...(((.((......)).))).))))...))))...(((((....))))).. ( -23.00) >DroSec_CAF1 11948 112 + 1 UUC--UUUAGGCAUAAAAACUUAUUGACAUUUCUCUGAGUGCAAGUGCCAUUCGAUUGCGGACCGGAAAGCCUUUUCGUGUUCAUCCGUUCAAUCAACUCAAUUAAUAUUGAUG ...--....(((((....(((((..((....))..)))))....)))))....(((((((((...(((.((......)).))).))))..)))))...(((((....))))).. ( -25.20) >DroSim_CAF1 12058 112 + 1 UUU--UUUAGGCAUAAAAACUUAUUGACAUUUCUCUGAGUGCAAGUGCCAUUCGAUUGCGGACCGGAAAGCCUUUUCGUGUUCAUCCGUUCAAUCAACUCAAUUAAUAUUGAUG ...--....(((((....(((((..((....))..)))))....)))))....(((((((((...(((.((......)).))).))))..)))))...(((((....))))).. ( -25.20) >DroEre_CAF1 12011 109 + 1 UCU--UUGAGGCAU---AACUUAUUGAGAUUUCUCUGAGUGCAAGUGCCAUUCGAUUCCGGACCGGAAAGCCUUUUCGUGUUCAUCCGUUCAAUCAACUCAAUUAAUAUUGAUG ...--(((((((((---.(((((..(((....))))))))....)))))..........(((((((((.....))))).))))......)))).....(((((....))))).. ( -23.60) >DroYak_CAF1 6082 112 + 1 UUU--UUUAGGCAUUAAAACUUAUUGACAUUUUUCUGAGUGCAAGUGCCAUUCGUUUGCGGAGCGGAAAGCCUUUUCGUGUUCAUCCGUUCAAUCAACUCAAUUAAUAUUGAUG ...--....((((((...(((((..((....))..)))))...))))))....(((....(((((((.((((.....).)))..)))))))....)))(((((....))))).. ( -24.30) >consensus UUU__UUUAGGCAUAAAAACUUAUUGACAUUUCUCUGAGUGCAAGUGCCAUUCGAUUGCGGACCGGAAAGCCUUUUCGUGUUCAUCCGUUCAAUCAACUCAAUUAAUAUUGAUG .........(((((....(((((..((....))..)))))....)))))....(((((((((...(((.((......)).))).))))..)))))...(((((....))))).. (-22.90 = -23.34 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:49 2006