Locus 7115

Sequence ID 3R_DroMel_CAF1
Location 18,751,902 – 18,752,002
Length 100
Max. P 0.510509
window11513

overview

Window 3

Location 18,751,902 – 18,752,002
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 87.67
Mean single sequence MFE -32.05
Consensus MFE -23.35
Energy contribution -23.73
Covariance contribution 0.37
Combinations/Pair 1.13
Mean z-score -1.40
Structure conservation index 0.73
SVM decision value -0.05
SVM RNA-class probability 0.510509
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18751902 100 + 27905053
AAACUCCUUGAUUGUGGUGUGCCCAUGUGUGUGCACUGCACAGAAUAUCGACUGGGCUGUGACCCACACGCGCCACUCGAGUCCUGCGACAAUGUUGUAG
......(((((..((((((((....((((.((.(((.((.(((........))).)).))))).)))))))))))))))))..(((((((...))))))) ( -34.50)
>DroSec_CAF1 10611 100 + 1
AAUCUCUUUGAUUGUGGUGUGUCCAUGUGUGUGCACUGCACAGAAUAUCGACUGGGCUGUGACCCACACGCGCCAUUCGAGUCCUGCGACAAUGUUGUAG
......(((((..(((((((((....(((.((.(((.((.(((........))).)).))))).)))))))))))))))))..(((((((...))))))) ( -31.10)
>DroSim_CAF1 10727 100 + 1
AAACUCCUUGAUUGUGGUGUGCCCAUGUGUGUGCACUGCACAGAAUAUCGACUGGGCUGUGACCCACACGCGCCAUUCGAGUCCUGCGACAAUGUUGUAG
......(((((..((((((((....((((.((.(((.((.(((........))).)).))))).)))))))))))))))))..(((((((...))))))) ( -33.20)
>DroYak_CAF1 4763 85 + 1
CAACUCCUUGAUUGU---------------GUGCACUGCACAGAAUGUCGACUGGCUUGUGACCCACACGGGCCAUUCGAGUCCUGUGACAAUGUUGUAG
((((......(((.(---------------((((...))))).))).((((.(((((((((.....))))))))).))))(((....)))...))))... ( -29.40)
>consensus
AAACUCCUUGAUUGUGGUGUGCCCAUGUGUGUGCACUGCACAGAAUAUCGACUGGGCUGUGACCCACACGCGCCAUUCGAGUCCUGCGACAAUGUUGUAG
............(((((((..(........)..)))))))..((...((((.(((((((((...)))).)).))).)))).))(((((((...))))))) (-23.35 = -23.73 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:48 2006