| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,750,469 – 18,750,559 |
| Length | 90 |
| Max. P | 0.546900 |
| Location | 18,750,469 – 18,750,559 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 83.52 |
| Mean single sequence MFE | -27.90 |
| Consensus MFE | -20.98 |
| Energy contribution | -21.57 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.546900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18750469 90 - 27905053 --------------AACGCUGGCCAGAAAGUUAAAAGGUGGCCCAGGGGCCCAUGCGACACAUGGCCGAAGCAUAUAGAGAAAUGUGGGUCGGGAACACGUGGC --------------..((((((((............)))((((....)))))).))).(((.((.((((..(((((......)))))..))))...)).))).. ( -27.90) >DroSec_CAF1 9228 90 - 1 --------------AACGCUGGCCAGAAAGUUAAAAGGUGGCCCAGGGGCCCAUGCGACACAUGGCCGGAACAUAUAAAGAAAUGUGGGUCGGGAACACGUGGC --------------..((((((((............)))((((....)))))).))).(((.((.((((..(((((......)))))..))))...)).))).. ( -28.60) >DroSim_CAF1 9292 90 - 1 --------------AACGCUGGCCAGAAAGUUAAAAGGUGGCCCAGGGGCCCAUGCGACACAUGGCCGGAACAUAUAGAGAAAUGUGGGUCGGGAACACGUGGC --------------..((((((((............)))((((....)))))).))).(((.((.((((..(((((......)))))..))))...)).))).. ( -28.60) >DroEre_CAF1 9351 88 - 1 --------------AGCGUUGGCCAGAAAGUUAAAAGGUGGCCCAGGGGCCCAUGCGACACAUGGCCGGAACAUACA--GAAAUGUGAGCCAGAAACACGUGGC --------------.(..(((((((....(((.....(.((((....)))))....)))...)))))))..).((((--....)))).((((........)))) ( -27.80) >DroYak_CAF1 3322 102 - 1 AAAAGACAAAAACCAACGUUGGCCAGAAAGUUAAAAGGUGGCCCAGGGGCCCAGGCGACACAUGGCCGGAACAUAUA--GAAAUGUGGGCCUGGAACACGUGGC ............(((.(((.(((((....(((.....(.((((....)))))....)))...)))))((..(((((.--...)))))..))......)))))). ( -31.10) >DroAna_CAF1 3447 84 - 1 --------------AACAUUGGCCAGAAAGUUAAAAGGUGGCCCUGGGCCACACACGACACAUGGCCCAAACAU------AAAUGUGACUCCAGCGCACGUGGC --------------......(((((....(((.....((((((...))))))....)))...))))).......------..(((((.(......))))))... ( -23.40) >consensus ______________AACGCUGGCCAGAAAGUUAAAAGGUGGCCCAGGGGCCCAUGCGACACAUGGCCGGAACAUAUA__GAAAUGUGGGUCGGGAACACGUGGC ...............(((..(((((....(((.....(.((((....)))))....)))...)))))((..(((((......)))))..)).......)))... (-20.98 = -21.57 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:47 2006