Locus 7112

Sequence ID 3R_DroMel_CAF1
Location 18,747,956 – 18,748,063
Length 107
Max. P 0.552762
window11506

overview

Window 6

Location 18,747,956 – 18,748,063
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.50
Mean single sequence MFE -33.44
Consensus MFE -26.70
Energy contribution -27.54
Covariance contribution 0.84
Combinations/Pair 1.16
Mean z-score -1.43
Structure conservation index 0.80
SVM decision value 0.04
SVM RNA-class probability 0.552762
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18747956 107 - 27905053
GCAAAGGAGAUGGGCUGCAGGUGGCUAAUCAACCUGAAGCAGGUGCAAUUUGUUUGCGCAACGUGCAAACUUGGCAAGCAUUUUGUGGUCGAAAGUUUACAGUUA---A----------G
......((((((.(((.(((((.........))))).)))...(((.....((((((((...))))))))...)))..))))))((((.(....).)))).....---.----------. ( -30.80)
>DroSec_CAF1 6708 107 - 1
GCAAAGGAGGUGGGCUGCAGGUGGCCAAUCAACCUGGAGCAGGUGCAAUUUGUUUGCGCAACGUGCAAACUUGGCUAGCAUUUUGUGGUCGAAAGUUUGCAGUUA---A----------G
(((((.....(.(((..(((.(((((((...(((((...))))).......((((((((...))))))))))))))).)....))..))).)...))))).....---.----------. ( -35.60)
>DroEre_CAF1 6737 107 - 1
GCAAAGGAGGUGGACUGCAGGUGGCCAAUCAACCUGAAGCAGGUGCAAUUUGUUUGCGCAACGUGCAAACUUGGCUAGCAUUUUGUGGUCGAAAGUUUGCAGUUA---A----------G
(((((.....(.(((..(((.(((((((...(((((...))))).......((((((((...))))))))))))))).)....))..))).)...))))).....---.----------. ( -36.20)
>DroYak_CAF1 729 110 - 1
GCAAAGGAGGUGGGCUGCAGGUGGGCAAUCAAGCUGAAGCAGGUGCAAUUUGUUUGAGCAACGUGCAAACUUGGCUAGCAUUUUGUGGUCGAAAGUUUGCAGUUGGGCA----------G
.((((.(((.((.(((((...(.(((......))).).))).)).)).))).))))..((((.((((((((((((((........)))))..)))))))))))))....----------. ( -32.90)
>DroAna_CAF1 876 116 - 1
GCCAAGG-UGUGGGCUGCAGGUGGCCAAUCAAACUGAAGCAGGUGCAAUUUGUUUGCGCAACGUGCUAACUUGGCCAGUAUUUUGUGGUUGAAAGUUUGCAAUUU---AAAGAAUAGAGG
((((((.-((..(((((....)))))...))......((((.((((((.....))))))....))))..))))))...((((((..(((((........))))).---..)))))).... ( -31.70)
>consensus
GCAAAGGAGGUGGGCUGCAGGUGGCCAAUCAACCUGAAGCAGGUGCAAUUUGUUUGCGCAACGUGCAAACUUGGCUAGCAUUUUGUGGUCGAAAGUUUGCAGUUA___A__________G
(((((.....(.(((..(((.(((((((...(((((...))))).......((((((((...))))))))))))))).)....))..))).)...))))).................... (-26.70 = -27.54 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:42 2006