Locus 7107

Sequence ID 3R_DroMel_CAF1
Location 18,741,706 – 18,741,797
Length 91
Max. P 0.850767
window11493

overview

Window 3

Location 18,741,706 – 18,741,797
Length 91
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 70.05
Mean single sequence MFE -22.01
Consensus MFE -11.12
Energy contribution -12.68
Covariance contribution 1.56
Combinations/Pair 1.33
Mean z-score -1.73
Structure conservation index 0.51
SVM decision value 0.79
SVM RNA-class probability 0.850767
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18741706 91 - 27905053
CUUAUUGCCCCCGCAUCGCACUCUCUAUUAUGUAAAAACAUAAAUGCAACUUGCGUUGAGUGCUGUGCGAAAUAAAAU--GCGAUGA-----CUGCAA---
.(((((((...(((((.((((((.....(((((....)))))(((((.....))))))))))).))))).........--)))))))-----......--- ( -26.80)
>DroVir_CAF1 15690 91 - 1
CGUUUU---G---CAAAGUAUUUGCUUUUAUGUAAAAUUAUAAAUGCUACUUAGGUUGA-UG---CGGCAAAUAAAACAAGUAGUAAUGCCUCUUGUCGAA
...(((---(---(...(((((.((((....(((..((.....))..)))..)))).))-))---).)))))....(((((..(.....)..))))).... ( -15.90)
>DroGri_CAF1 894 83 - 1
AGUACU---U-----GCGCAUUUGCUUUU-UGUGAAAAUAUAAAUGCGACUAAUGUAGAGUGCCUUGCUAACUGAAACGAACACU---------AGCCGAG
.(((((---(-----..(((((((((((.-(((....))).))).))))...)))).))))))(((((((..............)---------)).)))) ( -15.64)
>DroSec_CAF1 566 91 - 1
CUUAUUGCCCCCGCAUCGCACUCUCUAUUAUGUAAAAAUAUAAAUGCAACUUGAGUUGAGUGCUGUGCGAAAUAAAAU--GCGAUGA-----CUGCGA---
.(((((((...(((((.((((((....((((((....))))))....(((....))))))))).))))).........--)))))))-----......--- ( -21.80)
>DroSim_CAF1 573 91 - 1
CUUAUUGCCCCCGCAUCGCACUCUCUAUUAUGUAAAAACAUAAAUGCAACUUGCGUUGAGUGCUGUGCGAAAUAAAAU--GCGAUGA-----CUGCGA---
.(((((((...(((((.((((((.....(((((....)))))(((((.....))))))))))).))))).........--)))))))-----......--- ( -26.80)
>DroEre_CAF1 631 91 - 1
CUUAUUGCCCCCGCGUCGCACUCUCUAUUAUGUAAAAACAUAAAUGCAACUUGCGUUGAGUGCUGUGCGAAAUAAAAU--GCGAUGA-----CUGCGA---
.(((((((...((((..((((((.....(((((....)))))(((((.....)))))))))))..)))).........--)))))))-----......--- ( -25.10)
>consensus
CUUAUUGCCCCCGCAUCGCACUCUCUAUUAUGUAAAAACAUAAAUGCAACUUGCGUUGAGUGCUGUGCGAAAUAAAAU__GCGAUGA_____CUGCGA___
...........(((((.((((((....((((((....))))))((((.....)))).)))))).)))))................................ (-11.12 = -12.68 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:30 2006