Locus 7106

Sequence ID 3R_DroMel_CAF1
Location 18,738,163 – 18,738,259
Length 96
Max. P 0.500000
window11492

overview

Window 2

Location 18,738,163 – 18,738,259
Length 96
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.21
Mean single sequence MFE -21.47
Consensus MFE -12.86
Energy contribution -14.62
Covariance contribution 1.75
Combinations/Pair 1.10
Mean z-score -1.89
Structure conservation index 0.60
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18738163 96 - 27905053
UGCAACUGCAGAUUCGAUUUGAGCUUUGGCUUAUUUAUAAAUCUGCAAUUUCACCCUCCUG----CUAAGUUUCUCAU---UCUUUGCAAGUUG-CGCUUGGCA
.(((((((((((((..(..(((((....)))))..)...))))))).............((----(.(((........---.))).))))))))-)........ ( -25.70)
>DroSec_CAF1 171704 96 - 1
UGCAACUGCAGAUUCGAUUUGAGCUUUGGCUUAUUUAUAAAUCUGCAAUUUCACCCUCCUG----ACAAGUUUCUCAU---UCUUUGCAAGUUG-CGCUUGGCA
.(((((((((((((..(..(((((....)))))..)...)))))))....(((......))----)............---........)))))-)........ ( -22.30)
>DroEre_CAF1 169420 96 - 1
UGCAACUGCAGAUUCGAUUUGAGCUUUGGCUUAUUUAUAAAUCUGCAAUUUCACCCUCCUG----CUAAGUUUCGCAU---UCUUUGCAAGUUU-CGCUUGGCA
......((((((((..(..(((((....)))))..)...)))))))).............(----((((((((.(((.---....))).))...-.))))))). ( -24.90)
>DroWil_CAF1 161303 99 - 1
--CUGCUGCAGAUUCGAUACGAACAUUGGCUUAUUUAUAAUUCC---AUGUCUCCAUACUGUCCACAAAGAUUCCCAUCCCUCUUCACUGGUUACCACUUGACA
--..((((.(..((((...))))..)))))..............---.((((..........(((..((((..........))))...))).........)))) (  -7.71)
>DroYak_CAF1 170630 96 - 1
UGCAACUGCAGAUUCGAUUUGAGCUUUGGCUUAUUUAUAAAUCUGCAAUUUCACCCUCCUG----CUAAGUUUCUCAU---UCUUUGCAAGUUU-CGCUUGGCA
......((((((((..(..(((((....)))))..)...)))))))).............(----((((((..((((.---....))..))...-.))))))). ( -22.40)
>DroAna_CAF1 157071 96 - 1
UGCUGCUGCAGAUUCGAUUUGAGCUUUGGCUUAUUUAUAAAUCUGCAAUUUCACCCGCCCC-----AGUGUGGCUUAU--UUUUUUGCCAGUUU-CGCAUGGCA
......((((((((..(..(((((....)))))..)...)))))))).........(((..-----.(((((((....--......))))....-)))..))). ( -25.80)
>consensus
UGCAACUGCAGAUUCGAUUUGAGCUUUGGCUUAUUUAUAAAUCUGCAAUUUCACCCUCCUG____CUAAGUUUCUCAU___UCUUUGCAAGUUU_CGCUUGGCA
.((...((((((((..(..(((((....)))))..)...))))))))........................................(((((....))))))). (-12.86 = -14.62 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:29 2006