Locus 7105

Sequence ID 3R_DroMel_CAF1
Location 18,737,648 – 18,737,742
Length 94
Max. P 0.860393
window11491

overview

Window 1

Location 18,737,648 – 18,737,742
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 92.41
Mean single sequence MFE -28.95
Consensus MFE -24.60
Energy contribution -25.43
Covariance contribution 0.83
Combinations/Pair 1.13
Mean z-score -2.03
Structure conservation index 0.85
SVM decision value 0.83
SVM RNA-class probability 0.860393
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18737648 94 + 27905053
AAGUUGGCAACUUUGUGGCCCGCCUUGUUAAUCAUUCUGAUGACAAUGUGGCGUCCAUGGUCGUUGUCAGCUUCAUUCUCGCAGAAUUGCAAAU
(((((((((((.(..((((((((.((((((.((.....)))))))).)))).).)))..)..))))))))))).......((......)).... ( -32.80)
>DroSec_CAF1 171182 94 + 1
AAGUUGGCAACUUUGUGGCCCGCCUUGUUAAUCAUUCCGAUGACAAUGUAGCGCCCAUGGUCGCUGUCAGCUUCAUUCUCGCAGAAUUGCAAAU
((((((((((((.((.((((..(.((((((.((.....)))))))).)..).))))).)))...))))))))).......((......)).... ( -25.80)
>DroSim_CAF1 162922 94 + 1
AAGUUGGCAACUUUGUGGCCCGCCUUGUUAAUCAUUCCGAUGACAAUGUGGCGCCCAUGGUCGCUGUCAGCUUCAUUCUCGCAGAAUUGCAAAU
((((((((((((.((.(((((((.((((((.((.....)))))))).)))).))))).)))...))))))))).......((......)).... ( -31.10)
>DroEre_CAF1 168916 94 + 1
AAGUUGGCAACUUUGUGGCCCGCCUUGUUAAUCAUUCCGAUGACAAUGUGGCGCCCAUGGUCGCUGUCAGCUUCAUUCUCGCAGAAUUGCAAAU
((((((((((((.((.(((((((.((((((.((.....)))))))).)))).))))).)))...))))))))).......((......)).... ( -31.10)
>DroYak_CAF1 170113 94 + 1
AAGUUGGCAACUUUGUGGCCCGCCUUGUUAAUCAUUCCGAUGACAAUGUGGCGCCCAUGGUCGCUGUCAGCUACGUUCUCGCAGAAUUGCAAAU
.(((((((((((.((.(((((((.((((((.((.....)))))))).)))).))))).)))...))))))))........((......)).... ( -31.10)
>DroAna_CAF1 156679 94 + 1
AAACUGGCAACUUUGUGUGUCGCCUUGUUAAUCAUUUCGAUGACAAUGUGGUGGCCCUGGUCGUUGUCGUCGUCACUCUCACAGAAUUUCAAAU
.(((.(((.((.......)).)))..)))........(((((((((((.((....))....)))))))))))...................... ( -21.80)
>consensus
AAGUUGGCAACUUUGUGGCCCGCCUUGUUAAUCAUUCCGAUGACAAUGUGGCGCCCAUGGUCGCUGUCAGCUUCAUUCUCGCAGAAUUGCAAAU
((((((((((((.((.(((((((.((((((.((.....)))))))).)))).))))).)))...))))))))).......((......)).... (-24.60 = -25.43 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:28 2006