| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,735,489 – 18,735,584 |
| Length | 95 |
| Max. P | 0.729766 |
| Location | 18,735,489 – 18,735,584 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 82.63 |
| Mean single sequence MFE | -31.55 |
| Consensus MFE | -18.39 |
| Energy contribution | -19.37 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.729766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18735489 95 - 27905053 UUUGGGAGGCUGC--------------UC-CUGGCAACAGGGCGGAUGGGUAACGAAUAAAAUUGUUGACUAUGCCAUAAAGCGACAGCCAGAGUUGCAGGAGCAGCAGA ........(((((--------------((-(((.((((..(((..((((.((((((......)))))).))))((......))....)))...))))))))))))))... ( -38.40) >DroSec_CAF1 169091 89 - 1 UUUGGGAGGCUG---------------------GCAACGGGGCGGAUGAGUAACGAAUAAAAUUGUUGACUAUGCCAUAAAGCGACAGCCAGAGUUGCAGGAGCAGCAGA .......(((((---------------------((.....((((....((((((((......))))).))).)))).....))..)))))...(((((....)))))... ( -26.50) >DroSim_CAF1 160761 95 - 1 UUUGGGAGGCUGG--------------AA-GCGGCAACGGGGCGGAUGAGUAACGAAUAAAAUUGUUGACUAUGCCAUAAAGCGACAGCCAGAGUUGCAGGAGCAGCAGA .......(((((.--------------..-(((....)..((((....((((((((......))))).))).)))).....))..)))))...(((((....)))))... ( -30.90) >DroEre_CAF1 166776 110 - 1 UUUGGGAGGCUGUCCUCCCAACGGAGCAACGGGGCAACGGGGCGGAUGGGUAACAAAUAAAAUUGUUGACUAUGCCAUAAAGCGACAGCCAGAGUUGCAGGGGCAGCAGA .((((((((....))))))))....((..(...(((((..(((..((((.((((((......)))))).))))((......))....)))...))))).)..))...... ( -37.80) >DroYak_CAF1 167903 95 - 1 -UAGGGAGUCUGG--------------UACCGGGCAACGGGGCGUAUGGGUAACGAAUAAAAUUGUUGACUAUGCCAUAAAGCGACAGCCAGAGUUGCAGGAGCAGCAGA -.......(((((--------------(.(((.....)))((((((.(..((((((......)))))).)))))))...........))))))(((((....)))))... ( -30.80) >DroAna_CAF1 154534 88 - 1 -UGGGGAGGCUGC--------------UC-CCGGCAACGGGUCGUAUGUGUAACAAAUAAAAUUGUUGACUAUGCCAUAAAGCGACAGCG------GCAGAAAUAGCAAA -.......(((((--------------((-(((....))))..(((((..((((((......))))))..)))))...........))))------))............ ( -24.90) >consensus UUUGGGAGGCUGC______________UA_CCGGCAACGGGGCGGAUGGGUAACGAAUAAAAUUGUUGACUAUGCCAUAAAGCGACAGCCAGAGUUGCAGGAGCAGCAGA .......(((((....................(....)..((((....((((((((......))))).))).)))).........)))))...(((((....)))))... (-18.39 = -19.37 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:27 2006