| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,730,726 – 18,730,824 |
| Length | 98 |
| Max. P | 0.530997 |
| Location | 18,730,726 – 18,730,824 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 93.75 |
| Mean single sequence MFE | -26.12 |
| Consensus MFE | -20.83 |
| Energy contribution | -22.32 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18730726 98 - 27905053 --CGGCUCCUUGGGGCCUGCCUCUCGCCUUUUUCUCUACCAUAGAAAUUGUUUCUGCGUGAUUGAGGUUUUCCGGCAGACCUUUUCUUCAAUUCGCAGCU --.(((((....)))))..........(..(((((.......)))))..)...(((((.((((((((......((....))....))))))))))))).. ( -25.00) >DroSec_CAF1 164277 100 - 1 UUGGGCUCCUUGGGGCCUGCCUCUCGCCUUUUUCUCUACCAGAGAAAUUGUUUCUGCGUGAUUGAGGUUUUCCGGCAGACCUUUUCUUCAAUUCGCAGCU ..((((((....)))))).........(..((((((.....))))))..)...(((((.((((((((......((....))....))))))))))))).. ( -30.40) >DroEre_CAF1 162040 96 - 1 ---GGCUCCUUGGGG-CUCCUUCUCGCCUUUUUCUCUACCAGAGAAAUUGUUUCUGCGUGAUUGAGGUUUUCCGGCAGACCUUUUCUUCAACUCACAGCU ---(((((....)))-)).......(((..((((((.....))))))..).......((((((((((......((....))....)))))).)))).)). ( -23.00) >DroYak_CAF1 162902 96 - 1 ---CGCUCCUUGGGG-CUGCUUUUCGCCUUUUUCUCUACCAGAGAAAUUGUUUCUGCGUGAUUGAGGUUUUCCGGCAGACCUUUUCUUCAAUUCGCAGCU ---.((((....)))-)..........(..((((((.....))))))..)...(((((.((((((((......((....))....))))))))))))).. ( -26.10) >consensus ___GGCUCCUUGGGG_CUGCCUCUCGCCUUUUUCUCUACCAGAGAAAUUGUUUCUGCGUGAUUGAGGUUUUCCGGCAGACCUUUUCUUCAAUUCGCAGCU ...(((((....)))))..........(..((((((.....))))))..)...(((((.((((((((......((....))....))))))))))))).. (-20.83 = -22.32 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:23 2006