Locus 7101

Sequence ID 3R_DroMel_CAF1
Location 18,730,021 – 18,730,120
Length 99
Max. P 0.713851
window11485

overview

Window 5

Location 18,730,021 – 18,730,120
Length 99
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 90.91
Mean single sequence MFE -25.58
Consensus MFE -20.96
Energy contribution -22.36
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.82
SVM decision value 0.38
SVM RNA-class probability 0.713851
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18730021 99 + 27905053
UUUUUCGCCAUCUUGGCUGCGCAAA--AAGGGUUCUUUCUUC--GGGCCGGGCUUUCUCGACCGGCUUUUCAGACUUUUCCCGCUGUUUGCAUUUCUAAAUGU
......(((.....)))...(((((--..(((.....(((..--(((((((..........)))))))...))).....)))....)))))............ ( -28.00)
>DroSec_CAF1 163594 95 + 1
UUUUUCGCCAUCUUGGCUGCGCAAA-AAAGGGUUCUUUCUUC--GGG-----CUUUCUCCGCCGGCUUUUCAGACUUUUCCCGCUGUUUGCAUUUCUAAAUGU
......(((.....)))...(((((-...(((.(((.....(--.((-----(.......))).)......))).....)))....)))))............ ( -19.40)
>DroSim_CAF1 155304 100 + 1
UU-UUCGCCAUCUUGGCUGCGCAAAAAAAGGGUUCUUUCUUC--GGGGCGGACUUUCUCCGCCGGCUUUUCAGACUUUUCCCGCUGUUUGCAUUUCUAAAUGU
..-...(((.....)))...(((((....(((......(...--.)((((((.....))))))................)))....)))))............ ( -27.30)
>DroEre_CAF1 161384 100 + 1
UUUUUCGCCAUCUUGGCUGCGCAAA--AAGGGUUCUUUCUUU-UGGGCAAGGGCUUCUCGACCGGCUUUUCAGACUUUUCCCGCUGUUUGCAUUUCCAAAUGU
......(((.....)))...(((((--..(((.....(((..-.((((..((.........)).))))...))).....)))....)))))............ ( -21.70)
>DroYak_CAF1 162213 101 + 1
UUUUUCGCCAUCUUGGCUGCGCAAA--AAGGGUUCUUUCUUUUUGGGCCGGGCUUUCUCGACCGGCUUUUCAGACUUUUCCCGCUGUUUGCAUUGCCAAAUGU
........(((.(((((...(((((--..(((.....(((....(((((((..........)))))))...))).....)))....)))))...)))))))). ( -31.50)
>consensus
UUUUUCGCCAUCUUGGCUGCGCAAA__AAGGGUUCUUUCUUC__GGGCCGGGCUUUCUCGACCGGCUUUUCAGACUUUUCCCGCUGUUUGCAUUUCUAAAUGU
......(((.....)))...(((((....(((.....(((....(((((((..........)))))))...))).....)))....)))))............ (-20.96 = -22.36 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:22 2006