Locus 7100

Sequence ID 3R_DroMel_CAF1
Location 18,727,342 – 18,727,435
Length 93
Max. P 0.999741
window11484

overview

Window 4

Location 18,727,342 – 18,727,435
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 99.07
Mean single sequence MFE -26.08
Consensus MFE -24.43
Energy contribution -24.60
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.78
Structure conservation index 0.94
SVM decision value 3.98
SVM RNA-class probability 0.999741
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18727342 93 - 27905053
AAGUGCAUGGCAGAAAAGCAAAUCCAACAAAGUUGUUAUUGCUUUUGUUUCGGCUGGUCGAAAGGCGUUUAUAAAUUACUUAAAGCGCUUAAG
((((((..(((.(((((((((...((((...))))...)))))....)))).))).(((....)))..................))))))... ( -23.50)
>DroSec_CAF1 160935 93 - 1
AAGUGCAUGGCAGAGAAGCAAAUCCAAUAAAGUUGUUAUUGCUUUUGUUUCGGCUGGUCGAAAGGCGUUUAUAAAUUACUUAAAGCGCUUAAG
((((((..(((...((((((((..((((((.....))))))..)))))))).))).(((....)))..................))))))... ( -29.00)
>DroSim_CAF1 152619 93 - 1
AAGUGCAUGGCAGAGAAGCAAAUCCAAUAAAGUUGUUAUUGCUUUUGUUUCGGCUGGUCGAAAGGCGUUUAUAAAUUACUUAAAGCGCUUAAG
((((((..(((...((((((((..((((((.....))))))..)))))))).))).(((....)))..................))))))... ( -29.00)
>DroEre_CAF1 158734 93 - 1
AAGUGCAUGGCAGAAAAGCAAAUCCAAUAAAGUUGUUAUUGCUUUUGUUUCGGCUGGUCGAAAGGCGUUUAUAAAUUACUUAAAGCGCUUAAG
((((((....(((..(((((((..((((((.....))))))..)))))))...)))(((....)))..................))))))... ( -25.00)
>DroYak_CAF1 159480 93 - 1
AAGUGCAUGGCAGAAAAGCAAAUCCAAUAAAGUUGUUAUUGCUUUUGUUUCGGCUGGUCGAAAGGCGUUUAUAAAUUACUUAAAGCGCUUAAG
((((((....(((..(((((((..((((((.....))))))..)))))))...)))(((....)))..................))))))... ( -25.00)
>DroAna_CAF1 146382 93 - 1
AAGUGCAUGGCAGAAAAGCAAAUCCAAUAAAGUUGUUAUUGCUUUUGUUUCGGCUGGUCGAAAGGCGUUUAUAAAUUACUUAAAGCGCUUAAG
((((((....(((..(((((((..((((((.....))))))..)))))))...)))(((....)))..................))))))... ( -25.00)
>consensus
AAGUGCAUGGCAGAAAAGCAAAUCCAAUAAAGUUGUUAUUGCUUUUGUUUCGGCUGGUCGAAAGGCGUUUAUAAAUUACUUAAAGCGCUUAAG
((((((....(((..(((((((..((((((.....))))))..)))))))...)))(((....)))..................))))))... (-24.43 = -24.60 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:21 2006