| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,721,695 – 18,721,790 |
| Length | 95 |
| Max. P | 0.986658 |
| Location | 18,721,695 – 18,721,790 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 76.77 |
| Mean single sequence MFE | -20.05 |
| Consensus MFE | -12.86 |
| Energy contribution | -13.56 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.64 |
| SVM decision value | 2.05 |
| SVM RNA-class probability | 0.986658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18721695 95 + 27905053 ACAUUGCAAAAAGCAUUGAAGUGCAGUGAAAACAACACACGGCACAGCAGCUA--CACUGCACGAAAAUACA--CGCU--AAAAAA--UCCAAAUUCUCA---CCA------- .((.(((.....))).))..((((((((.......(....)((......))..--)))))))).........--....--......--............---...------- ( -17.40) >DroSec_CAF1 155429 95 + 1 ACAUUGCAAAAAGCAUUGAAGUGCAGUGAAAACAACACACGGCACAGCAGCUA--CACUGCACGAAAAUGCA--AGGU--AAAAGU--AGCAAAAUCUCA---GUA------- ...((((.....(((((...((((((((.......(....)((......))..--))))))))...))))).--..))--))....--............---...------- ( -21.40) >DroSim_CAF1 147033 95 + 1 ACAUUGCAAAAAGCAUUGAAGUGCAGUGAAAACAACACACGGCACAGCAGCUA--CACUGCACGAAAAUGCA--AGGU--ACAAGU--AGCAAAAUCUCA---GUA------- ...((((.....(((((...((((((((.......(....)((......))..--))))))))...))))).--...(--(....)--))))).......---...------- ( -22.50) >DroEre_CAF1 153191 95 + 1 ACAUUGCAAAAAGCAUUGAAGUGCAGUGAAAACAACACACGGCACAGCAGCUG--CACUGCAAGAAAAUCAU--GGCU--AAUUGG--UACGAAAUCUCG---CGA------- ...((((....(((..(((.((((.(((.........))).)))).((((...--..)))).......))).--.)))--......--...((....)))---)))------- ( -20.50) >DroYak_CAF1 153856 94 + 1 ACAUUGCAAAAAGCAUUGAAGUGCAGUGAAAACAACACACGGCACAACAGCUA--CACUGCACGAAAAUGCA--CACU--UAAAGU--UCCAAAGUCGCA---UU-------- ....(((.....(((((...((((((((.......(....)((......))..--))))))))...))))).--.(((--(.....--....)))).)))---..-------- ( -22.90) >DroAna_CAF1 140427 109 + 1 ACAUUGCAAAAAGCAUUGGAGUGCAGUGAAAACAACACACAAAACA---ACUAAGCACUGAAAAAAA-UAAAUAGGCUUUAGGAAAAGGAUUAACUCUUGACAGCAACAUCAA .((.(((.....((((....)))).((....)).............---.....))).)).......-.......(((((((((...........)))))).)))........ ( -15.60) >consensus ACAUUGCAAAAAGCAUUGAAGUGCAGUGAAAACAACACACGGCACAGCAGCUA__CACUGCACGAAAAUGCA__AGCU__AAAAGU__UACAAAAUCUCA___GUA_______ .((.(((.....))).))..((((((((............(((......)))...)))))))).................................................. (-12.86 = -13.56 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:16 2006