Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,715,593 – 18,715,695 |
Length | 102 |
Max. P | 0.861938 |
Location | 18,715,593 – 18,715,695 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 78.36 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -18.02 |
Energy contribution | -18.86 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.12 |
Mean z-score | -1.92 |
Structure conservation index | 0.64 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861938 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18715593 102 - 27905053 AGUCGCAGAACUGUAACUGUCGAAAUGUGGCAAGAAACCAACAGGACAAAUUGUGGUGGUAACAUAGCUACUUUUUGGAUAGUUAUUGGUGUUCAAAAUAUG------------- .......((((.(((((((((.(((.(((((.....((((.((.((....)).)).))))......)))))..))).)))))))))....))))........------------- ( -28.00) >DroSec_CAF1 149447 102 - 1 AGUCGGAGAGCUGAAACUGUCGAAAUGUGGCAAGAAACCAUCAGGACGAAUUGUGGUGGUAACAUAGCUACUUUUUGGAUAGUUAUUGGUGUUCAAAAUAUG------------- .....(((.((..((((((((.(((.(((((.....(((((((.((....)).)))))))......)))))..))).))))))).)..)).)))........------------- ( -30.60) >DroSim_CAF1 140991 102 - 1 AGUCGGAGAACUGAAACUGUCGAAAUGUGGCAAGAAACCAUCAGGACGAAUUGUGGUGGUAACAUAGCUACUUUUCGGAUAAUUAUUGGUGUUCAAAAUAUG------------- .....(((.((..(.....((((((.(((((.....(((((((.((....)).)))))))......))))).)))))).......)..)).)))........------------- ( -25.40) >DroEre_CAF1 147158 102 - 1 AGCCGGCGAGCUGAAACUGUCGAAAUGUGGCAAGAAACCAUCAGGCCGAACAGAGAUGGUAUCUUAGCUACUUUUUAGAUAGCUGUCAGAGUCCAAAUUGGG------------- ....(((...((((..(((((((((.(((((((((.((((((............)))))).)))).))))).)))).)))))...)))).))).........------------- ( -32.40) >DroYak_CAF1 145369 111 - 1 AGUCGUAGAGCUGAAACUGUCGAAAUGUGGCAAGAAACCAUCAGGCGGCGCAGAGAUGAUAGCCUAGCUACUUUUUAGAUAGCUC----AUUUCCAAUUAGAAAGGUGCUUAGAU .(((...(((((((..(((((((((.(((((..((.....))((((....((....))...)))).))))).)))).))))).))----)((((......))))...)))).))) ( -24.60) >consensus AGUCGGAGAGCUGAAACUGUCGAAAUGUGGCAAGAAACCAUCAGGACGAAUUGUGGUGGUAACAUAGCUACUUUUUGGAUAGUUAUUGGUGUUCAAAAUAUG_____________ .......((((...(((((((((((.(((((.....((((((............))))))......))))).)))).)))))))......))))..................... (-18.02 = -18.86 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:15 2006