Locus 7095

Sequence ID 3R_DroMel_CAF1
Location 18,713,593 – 18,713,684
Length 91
Max. P 0.836470
window11476

overview

Window 6

Location 18,713,593 – 18,713,684
Length 91
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 79.55
Mean single sequence MFE -27.37
Consensus MFE -18.80
Energy contribution -19.92
Covariance contribution 1.11
Combinations/Pair 1.21
Mean z-score -1.72
Structure conservation index 0.69
SVM decision value 0.73
SVM RNA-class probability 0.836470
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18713593 91 + 27905053
G------------CGAAACGAGGGUUGCGACCUGAGUUGAUCGCGGUCGAGGUUUUUCGAAAAGCGAAAGUAACAAAGGGUUGCCAACAACACC-ACCCCUCUC
.------------......(((((.((.(.(((..((((.((((..(((((....)))))...))))...))))..)))((((....)))).))-).))))).. ( -29.40)
>DroSec_CAF1 147430 76 + 1
G------------CGAAACGAGGGUUGCGACCUGAGUUGAUCGCGGUCGAAGUU-UUCGAAAAGCGAAAGUAACAAAG-----CC-------CUAACCCAC---
.------------........((((((.(..((..((((.((((..((((....-.))))...))))...))))..))-----..-------)))))))..--- ( -21.50)
>DroSim_CAF1 139017 80 + 1
G------------CGAAACGAGGGUUGCGACCUGAGUUGAUCGCGGUCGAGGUU-UCCGAAAAGCGAAAGUAACAAAGGGUUGCC-------CU-ACCCAU---
.------------........((((.(((((((..((((.((((..(((.....-..)))...))))...))))...))))))).-------..-))))..--- ( -28.70)
>DroEre_CAF1 144835 81 + 1
G------------CGAAACGAGGGUUGCGACCUGAGUUGAUCGCGGUCGAGGUU-UUCGGAAAGCGAAAGUAACAAAGGGUUGCC-------UGCAACCAC---
(------------(....((((..(..((((((((.....))).)))))..)..-))))....)).............(((((..-------..)))))..--- ( -26.70)
>DroYak_CAF1 143025 93 + 1
ACGAAAAGCGAAACGAAACGAGGGUUGCGACCUGAGUUGAUCGCGGUCGAGGUU-UUUGGAAAGCGAAAGUAACAAAGGGUUGCC-------CUUACCCAC---
.....................((((.(((((((..((((.((((..((.((...-.)).))..))))...))))...))))))).-------...))))..--- ( -27.10)
>DroAna_CAF1 131685 84 + 1
G------------CCAAACGAGGGUUGCGACCUGCGUUGAUCGCGGUCGAGGCU-UUCG-AAAGUGAAAGUAACAAAGGGUUCGCUUCG---GUGUCUCAC---
(------------((...(((((((..(((((.(((.....))))))))..)))-))))-.(((((((..(......)..))))))).)---)).......--- ( -30.80)
>consensus
G____________CGAAACGAGGGUUGCGACCUGAGUUGAUCGCGGUCGAGGUU_UUCGAAAAGCGAAAGUAACAAAGGGUUGCC_______CU_ACCCAC___
.....................((((.(((((((..((((.((((..(((((....)))))...))))...))))...)))))))...........))))..... (-18.80 = -19.92 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:14 2006