Locus 7092

Sequence ID 3R_DroMel_CAF1
Location 18,710,910 – 18,711,007
Length 97
Max. P 0.539444
window11470

overview

Window 0

Location 18,710,910 – 18,711,007
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 93.54
Mean single sequence MFE -26.84
Consensus MFE -22.13
Energy contribution -23.22
Covariance contribution 1.09
Combinations/Pair 1.13
Mean z-score -1.84
Structure conservation index 0.82
SVM decision value 0.01
SVM RNA-class probability 0.539444
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18710910 97 + 27905053
AAGGAAGCCAAAGUGGCAAACGGGUUGAGACAGAGGGAUAUACUCGUAAAGGCGGCCAAGAGGAUGGAGUCGAGGGCCGUCAGAAAUUCCCCAAAGU
..(((((((.....)))..((((((.....(....).....))))))...(((((((..((........))...))))))).....))))....... ( -28.50)
>DroSec_CAF1 144731 97 + 1
AAGGAAGCCAAAGUGGCAAACGGGUUGAGACAGAGGGAUAUACUCGUAAAGGCGGCCAAGAGGAUGGAGUCGAGGGCCGUCAGAAAUUCCCCAAAGU
..(((((((.....)))..((((((.....(....).....))))))...(((((((..((........))...))))))).....))))....... ( -28.50)
>DroSim_CAF1 136396 97 + 1
AAGGAAGCCAAAGUGGCAAACGGGUUGAGACAGAGGGAUAUACUCGUAAAGGCGGCCAAGAGGAUGGAGUCGAGGGCCGUCAGAAAUUCCCCAAAGU
..(((((((.....)))..((((((.....(....).....))))))...(((((((..((........))...))))))).....))))....... ( -28.50)
>DroEre_CAF1 142271 97 + 1
AAGGAAGCCAAAGUGGCAAACGGGUUGAGACAGAGGGAUACACUCGUAAAGGCGGCCAAGAGGAUGGAGUCGAGGGCCGUCAGAAAUUCCCCAAAGU
..(((((((.....)))..((((((..(..(....)..)..))))))...(((((((..((........))...))))))).....))))....... ( -28.30)
>DroYak_CAF1 140251 97 + 1
AAGGAAGCCAAAGUGGCAAACGGGUUGAGACACAGGGAUAUACUCGUAAAGGCGGCCAAGAGGAUGGAGUCGAGGGCCGUCAGAAAUUCCCCAAAGU
..(((((((.....)))..((((((.....(....).....))))))...(((((((..((........))...))))))).....))))....... ( -28.50)
>DroAna_CAF1 129362 90 + 1
AAGGAAGCCAAAGUGGCAAACGGGUUGAGACAGAAGGAUA-------AGAAGUGGUUGGCUGGAUGGAGUCGAGGGCCGUCAGAAAUUCCCCAAAGU
..((((.......((((...(((.((.(..(((...(((.-------.......)))..)))..).)).)))...)))).......))))....... ( -18.74)
>consensus
AAGGAAGCCAAAGUGGCAAACGGGUUGAGACAGAGGGAUAUACUCGUAAAGGCGGCCAAGAGGAUGGAGUCGAGGGCCGUCAGAAAUUCCCCAAAGU
..(((((((.....)))..((((((.....(....).....))))))...(((((((..((........))...))))))).....))))....... (-22.13 = -23.22 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:09 2006