| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,704,656 – 18,704,754 |
| Length | 98 |
| Max. P | 0.956793 |
| Location | 18,704,656 – 18,704,754 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 80.53 |
| Mean single sequence MFE | -23.10 |
| Consensus MFE | -15.47 |
| Energy contribution | -15.54 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.956793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18704656 98 - 27905053 ACAACAACGGCAAAAAAAAAUGGAGGAGGGAAACCGAAAUAACAGCAG-----CGCCAGUUACAUGAAGAAUUAUUGCGGCGGCGAAAUGCUGUCCACCUACU .....................((.(((((....)).......(((((.-----((((.((..((...........))..))))))...)))))))).)).... ( -28.00) >DroEre_CAF1 138189 96 - 1 ACAACAAACGCAAAAAAAA--AGUAGAGGGAAAGCGAAAUAACAGCAG-----CGCCAGUUACAUGAAGAAUUAUUGCGGCGGCGAAAUGCUGUCCACCUACU ...................--(((((..(((...........(((((.-----((((.((..((...........))..))))))...))))))))..))))) ( -24.90) >DroWil_CAF1 131353 96 - 1 AAAA--AAAGCAAGGAAAGCGAAAUGAGGGAA-----AAUAGCAGCAGCAACGCGCCAGUUACAUGAAGAAUUAUUGCGGCGGCGAAAUGCUGUCCACCUACU ....--......(((...((............-----....)).((((((...((((.((..((...........))..))))))...))))))...)))... ( -21.59) >DroAna_CAF1 127220 87 - 1 AAUAAAAACGCAA-----------AGAGGGAAACCAAAAUAACAGAAG-----CGCCAGUUACAUGAAGAAUUAUUGCGGCGGCGAAAUGCUGUCCACCUACU .............-----------...((....))......((((...-----((((.((..((...........))..)))))).....))))......... ( -17.90) >consensus AAAACAAACGCAAAAAAAA__AGAAGAGGGAAACCGAAAUAACAGCAG_____CGCCAGUUACAUGAAGAAUUAUUGCGGCGGCGAAAUGCUGUCCACCUACU ..........................(((............((((((......((((.((..((...........))..))))))...))))))...)))... (-15.47 = -15.54 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:08 2006