Locus 7090

Sequence ID 3R_DroMel_CAF1
Location 18,700,589 – 18,700,690
Length 101
Max. P 0.994289
window11468

overview

Window 8

Location 18,700,589 – 18,700,690
Length 101
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 97.36
Mean single sequence MFE -23.45
Consensus MFE -22.26
Energy contribution -22.52
Covariance contribution 0.25
Combinations/Pair 1.14
Mean z-score -1.68
Structure conservation index 0.95
SVM decision value 2.47
SVM RNA-class probability 0.994289
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18700589 101 - 27905053
CCAAAUUAAAAUGCAAAUUAAAUGCAAAUAAACAAUUAAAAUUUCCAACUGCGUGGCGCUGAUUGUGGAGGAAGCCAUAUCGAGUGGGCGUGACCAAUCAA
...........((((.......)))).......................((.((.(((((.(((((((......)))))....)).))))).))))..... ( -18.50)
>DroSec_CAF1 138198 101 - 1
CCAAAUUAAAAUGCAAAUUAAAUGCAAAUAAACAAUUAAAAUUUCCAACUGCGUGGCGCUGAUUGUGGCGGAAGCCAUAUCGAGUGGGCGUGGCCAAUCAA
...........((((.......)))).......................((.((.(((((.((((((((....))))))....)).))))).))))..... ( -25.90)
>DroSim_CAF1 129799 101 - 1
CCAAAUUAAAAUGCAAAUUAAAUGCAAAUAAACAAUUAAAAUUUCCAACUGCGUGGCGCUGAUUGUGGCGGAAGCCAUAUCGAGUGGGCGUGGCCAAUCAA
...........((((.......)))).......................((.((.(((((.((((((((....))))))....)).))))).))))..... ( -25.90)
>DroEre_CAF1 134201 101 - 1
CCAAAUUAAAAUGCAAAUUAAAUGCAAAUAAACAAUUAAAAUUUCCAACUGCGUGGCGCUGAUUGUGGCGGAAGCCAUAUCGAGUGGGCGUGGCCAAUCAA
...........((((.......)))).......................((.((.(((((.((((((((....))))))....)).))))).))))..... ( -25.90)
>DroYak_CAF1 133455 101 - 1
CCAAAUUAAAAUGCAAAUUAAAUGCAAAUAAACAAUUAAAAUUUCCAACUGCGUGGCGCUGAUUCUGGCGGAAGCCAUAUCGAGUGGGCGUGGCCAAUCAA
...........((((.......)))).......................((.((.(((((.((((((((....))))....)))).))))).))))..... ( -27.00)
>DroAna_CAF1 123421 101 - 1
CCAAAUUAAAAUGCAAAUUAAAUGCAAAUAAACAAUUAAAAUUUUCAACUGCGUGACGCUGAUUGUGGCGGAAGCAUUAUCGAGUGGGUGUGGCCAAUCAA
...........((((.......)))).......................((.((.(((((.((((..((....)).....).))).))))).))))..... ( -17.50)
>consensus
CCAAAUUAAAAUGCAAAUUAAAUGCAAAUAAACAAUUAAAAUUUCCAACUGCGUGGCGCUGAUUGUGGCGGAAGCCAUAUCGAGUGGGCGUGGCCAAUCAA
...........((((.......)))).......................((.((.(((((.((((((((....))))))....)).))))).))))..... (-22.26 = -22.52 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:07 2006