Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,509,062 – 2,509,153 |
Length | 91 |
Max. P | 0.768270 |
Location | 2,509,062 – 2,509,153 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 79.56 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -17.99 |
Energy contribution | -18.72 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.23 |
Mean z-score | -2.06 |
Structure conservation index | 0.56 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2509062 91 - 27905053 -----AUAGACUGUUGUAGCAGUAGGGGCUGUUCCAUGGAGAAGUCUGCUCCGAUUGGUUCGCUUCUGCUGCGAAGCGGAUAAUGAGAGUGUGCAG -----.....(((((...(((((((((((.(..((((((((.......)))))..)))..))))))))))))..)))))................. ( -33.40) >DroSec_CAF1 39141 91 - 1 -----AUAGACUGUUGUAGCAGUAGGGGCUGUUCCAUGGAGAAGUCUGCUCCGAUUGGUUCGCUUCUGCUGCGAAGCGGAUAAAGCGAGUGUGCAG -----.....(((((...(((((((((((.(..((((((((.......)))))..)))..))))))))))))..))))).....(((....))).. ( -34.80) >DroSim_CAF1 37707 91 - 1 -----AUAGACUGUUGUAGCAGUAGGGGCUGUUCCAUGGAGAAGUCUGCUCCGAUUGGUUCGCUUCUGCUGCGAAGCGGAUAAAGCGAGUGUGCAG -----.....(((((...(((((((((((.(..((((((((.......)))))..)))..))))))))))))..))))).....(((....))).. ( -34.80) >DroEre_CAF1 38707 93 - 1 UUUUGAUAGACUA-UGCAGCGGUAGGGGCUGUUCCAUGG--AAGUCUGCUCCGAUUGGUUCACUUCUGCUGCGAAGCGGAUAAAGAGAGUGCGCAG .............-....((((((((((.((..((((((--(.(....)))))..)))..))))))))))))...(((.((.......)).))).. ( -27.80) >DroYak_CAF1 39475 94 - 1 UUUUGAUAGACUGUUGGAGCAGUAGGGGCUGUUCCAUGG--AAGUCUGCUCCGAUUGGUUCGCUUCUGCUGCGAAUCGGAUAAAGAGAGUGCGCAG ......((((((..(((((((((....)))))))))...--.)))))).(((((((.((..((....)).)).)))))))................ ( -33.60) >DroAna_CAF1 32930 87 - 1 ------UGUAAUUUUAUUUAAACGGGGGCUGAACGGCCA--GAGUCUCCUCUGAUUGGCUCGUUUCCCCAGUGAA-CGGAUAAAGUGCGCGAAAAU ------.((.(((((((((..((.((((..(((((((((--..(((......))))))).))))))))).))...-.)))))))))..))...... ( -26.90) >consensus _____AUAGACUGUUGUAGCAGUAGGGGCUGUUCCAUGG__AAGUCUGCUCCGAUUGGUUCGCUUCUGCUGCGAAGCGGAUAAAGAGAGUGUGCAG .......(((((..((.((((((....)))))).))......)))))((((......(((((((((......))))))))).....))))...... (-17.99 = -18.72 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:55 2006