Locus 7088

Sequence ID 3R_DroMel_CAF1
Location 18,699,270 – 18,699,373
Length 103
Max. P 0.570433
window11465

overview

Window 5

Location 18,699,270 – 18,699,373
Length 103
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 91.13
Mean single sequence MFE -35.26
Consensus MFE -26.62
Energy contribution -27.54
Covariance contribution 0.92
Combinations/Pair 1.07
Mean z-score -1.62
Structure conservation index 0.75
SVM decision value 0.07
SVM RNA-class probability 0.570433
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18699270 103 + 27905053
UAGCUAGAAUUUCAGCAGCAGGAGCGGAGUUACCAUAUCCACGCCAGGAUC---AGGAUGUGUGGUGGCAGAGUGCGGCUGAGCAGGGCCAAGAAUAACAGCAGUU
..(((.....(((.(((((....))...((((((((((.....((......---.))..))))))))))....)))((((......))))..)))....))).... ( -27.50)
>DroSec_CAF1 129511 101 + 1
UAGCUGGAAUUUCAGCAGCUGGAGCGGAGUAACCAUAUCCUCGCCAGGAUC---AGGAUG--UGGUGGCAGAGUGCGGCUGAGCAGGGCCAAGAAUAACAGCAGUU
..(((((....))))).((((..(((..((.((((((((((..........---))))))--)))).))....)))((((......))))........)))).... ( -34.40)
>DroSim_CAF1 128465 101 + 1
UAGCUGGAAUUUCAGCAGCAGGAGCGGAGUUACCAUAUCCGCGCCAGGAUC---AGGAUG--UGGUGGCAGAGUGCGACUGAGCAGGGCCAAGAAUAACAGCAGUU
..((((..((((..((..(((..(((..((((((((((((...........---.)))))--)))))))....)))..)))......))...))))..)))).... ( -34.30)
>DroEre_CAF1 132857 102 + 1
UAGCUGGAAUUUCAGCAGCAGGAGCGUAGUCACCAUAUCCUCGCCAGGAUCGCCGGGAUG--UGGUGGCA--GUGAGGCCGAGCUGGGCCAAGAAUAACAGCAGUU
..((((....(((.((.((....))...(((((((((((((.((.......)).))))))--))))))).--))..((((......))))..)))...)))).... ( -42.30)
>DroYak_CAF1 132103 102 + 1
UAGCUGGAAUUUCAGCAGCAGGAGCGGAGUCACCAUAUCCUCGCCAGGAUCGCCAGGAUG--UGGUGGAA--GUGCGGCAGAGCAGGGCCAAGAAUAACAGCAGUU
..((((....(((.(((((....))....((((((((((((.((.......)).))))))--))))))..--.)))(((........)))..)))...)))).... ( -37.80)
>consensus
UAGCUGGAAUUUCAGCAGCAGGAGCGGAGUCACCAUAUCCUCGCCAGGAUC___AGGAUG__UGGUGGCAGAGUGCGGCUGAGCAGGGCCAAGAAUAACAGCAGUU
..((((....(((.(((((....))...((((((((((((...............)))))..)))))))....)))((((......))))..)))...)))).... (-26.62 = -27.54 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:04 2006