Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,696,785 – 18,696,903 |
Length | 118 |
Max. P | 0.844260 |
Location | 18,696,785 – 18,696,903 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 94.06 |
Mean single sequence MFE | -35.44 |
Consensus MFE | -29.48 |
Energy contribution | -29.64 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.11 |
Mean z-score | -1.61 |
Structure conservation index | 0.83 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18696785 118 + 27905053 CCAAAUACUAUUUCUCCAAGUACGGCUUUCUGCUGCUGGCAGGAGGUUGGCCGUGCAAAAGACAAUAAGCGCAUAAAUUACGCCCGAAAUGUGCAGGGUGAAAGGUGAAAGGUGCCGA .....((((.((((.((..((((((((.(((.(((....))).)))..))))))))........................(((((..........)))))...)).)))))))).... ( -37.00) >DroSec_CAF1 127088 118 + 1 CCAAAUACUUUUUCUCCAAGUAAAGCUUUCUGCUGCUGGCAGGAGGUUGGCCGUGCAAAAGACAAUAAGCGCAUAAAUUACGCCCGAAAUGUGCAGGGUGAAAGGUGAAAGGUGCCGA .....((((((((..........((((((((((.....)))))))))).(((((((............))))........(((((..........)))))...))))))))))).... ( -33.00) >DroSim_CAF1 126081 118 + 1 CCAAAUACUUUUUCUCCAAGUAAGGCUUUCUGCUGCUGGCAGGAGGUUGGCCGUGCAAAAGACAAUAAGCGCAUAAAUUACGCCCGAAAUGUGCAGGGUGAAAGGUGAAAGGUGCCGA .....((((((((..((..((((((((.(((.(((....))).)))..))))((((............)))).....))))((((..........))))....)).)))))))).... ( -33.10) >DroEre_CAF1 130294 117 + 1 UAAAAUA-CUUUUCUCCAAGUAAGGCUUUCUGCUGCUGGCAGGAGGUUGGGCGUGCAAAAGACAAUAAGCGCAUAAAUUACGCCCGAAAUGUGCAGGGUGAAAGGUGAAAGGUGGCGA .....((-((((((.((..((..((((((((((.....))))))))))..))((((............))))........(((((..........)))))...)).)))))))).... ( -39.10) >DroYak_CAF1 128394 117 + 1 AAAAUAA-AUUUUCUCCAAGUACGGCUUUCUGCUGCUGGCAGGAGGUUGGCCACGCAAAAGACAAUAAGCGCAUAAAUUACGCCCGAAAUGUGCUGGGUGAAAGGUGAAAGGUGGCGA .......-..............(((((((((((.....)))))))))))(((((((............)).(((...((.((((((........)))))).)).)))....))))).. ( -35.00) >consensus CCAAAUACUUUUUCUCCAAGUAAGGCUUUCUGCUGCUGGCAGGAGGUUGGCCGUGCAAAAGACAAUAAGCGCAUAAAUUACGCCCGAAAUGUGCAGGGUGAAAGGUGAAAGGUGCCGA ........((((((.((......((((((((((.....))))))))))....((((............))))........(((((..........)))))...)).))))))...... (-29.48 = -29.64 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:02 2006