Locus 7085

Sequence ID 3R_DroMel_CAF1
Location 18,692,048 – 18,692,164
Length 116
Max. P 0.518667
window11462

overview

Window 2

Location 18,692,048 – 18,692,164
Length 116
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 89.30
Mean single sequence MFE -32.92
Consensus MFE -25.81
Energy contribution -27.00
Covariance contribution 1.19
Combinations/Pair 1.09
Mean z-score -1.40
Structure conservation index 0.78
SVM decision value -0.03
SVM RNA-class probability 0.518667
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18692048 116 - 27905053
UUGCUUCAUUUUCGUAAAUAAGUAGCUUGCAUCACUGCGAAAACCGCUCUGGAAAAUGCGAUUGCAACCACU-CAGCUGCAUGAGUGUGGCAUGCGAAAUUUCUGAGCAGCUCAUCG
.(((((.((((....)))))))))(((((((....))))).....((((.(((((...((..(((...((((-((......))))))..)))..))...))))))))).))...... ( -31.50)
>DroSec_CAF1 121949 117 - 1
UUGCUUCAUUUUCGUAAAUAAGUAGCUUGCAUCACUGCGAAAACCGCGCUGGAAAAUGCAAUUGCAACCACUCCAGCUGCAAGAGUGUAGCAUGCGAAAACCUCGAGCAGCUCAUCG
((((((..((((((((..((.....((((((.....(((.....)))((((((...(((....))).....))))))))))))....))...))))))))....))))))....... ( -34.80)
>DroSim_CAF1 120999 117 - 1
UUGCUUCAUUUUCGUAAAUAAGUAGCUUGCAUCACUGCGAAAACCGCGCUGGAAAAUGCGAUUGCAACCACUCCAGCUGCAGGAGUGUGGCAUGCGAAAACCUCGAGCAGCUCAUCG
((((((..((((((((.........((((((.....(((.....)))((((((...(((....))).....)))))))))))).........))))))))....))))))....... ( -33.77)
>DroEre_CAF1 125296 115 - 1
UUGCUUAAUUUUCGUAAGUAAGUAGCUUGCAGCACUAU-AAGCCAGAGCCCAAAAAUGCGAUUGCAACCACU-CAGCUGCAAGAGCGUGGCAUGCGAAAACCUCGAGCAGCUCAUCG
((((((..((((((((.((..((..((((((((.....-..((....)).......(((....)))......-..)))))))).))...)).))))))))....))))))....... ( -31.60)
>consensus
UUGCUUCAUUUUCGUAAAUAAGUAGCUUGCAUCACUGCGAAAACCGCGCUGGAAAAUGCGAUUGCAACCACU_CAGCUGCAAGAGUGUGGCAUGCGAAAACCUCGAGCAGCUCAUCG
((((((..((((((((.....((((.((((((((.((((.....)))).))....))))))))))..........(((((......))))).))))))))....))))))....... (-25.81 = -27.00 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:01 2006