Locus 7082

Sequence ID 3R_DroMel_CAF1
Location 18,688,144 – 18,688,275
Length 131
Max. P 0.764816
window11457 window11458

overview

Window 7

Location 18,688,144 – 18,688,246
Length 102
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 86.67
Mean single sequence MFE -16.79
Consensus MFE -14.48
Energy contribution -14.48
Covariance contribution -0.00
Combinations/Pair 1.05
Mean z-score -1.64
Structure conservation index 0.86
SVM decision value 0.51
SVM RNA-class probability 0.764816
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18688144 102 - 27905053
UCGCACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCGUCUCUGGGUCUGCCCGAAAAACCAAAAAAAAAAAAAAAAAAAUGAAACAGGAAC
.((((((.(((((...(((((....)))))...)))))....))))))....((((....))))...................................... ( -17.80)
>DroSec_CAF1 118042 88 - 1
UCGCACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCGUCUUUGGGUCUGGCUGAAAUACGAAAAAA--------------GAAACAGGAAC
.((((((.(((((...(((((....)))))...)))))....))))))((((.(..(((.................)--------------))..))))).. ( -16.63)
>DroSim_CAF1 117055 88 - 1
UCGCACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCGUCUUUGGGUCUGGCUGAAAUACGAAAAAA--------------GAAACAGGAAC
.((((((.(((((...(((((....)))))...)))))....))))))((((.(..(((.................)--------------))..))))).. ( -16.63)
>DroYak_CAF1 119226 85 - 1
UCGCACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCGUCUUUGGGUCUGGCCGAAAAA---AAAAA--------------AAAACACGAAG
.((((((.(((((...(((((....)))))...)))))....))))))..(((((......)))))...---.....--------------........... ( -16.10)
>consensus
UCGCACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUGUGCGUCUUUGGGUCUGGCCGAAAAACGAAAAAA______________GAAACAGGAAC
.((((((.(((((...(((((....)))))...)))))....))))))..(((((......))))).................................... (-14.48 = -14.48 +  -0.00)

alignment

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secondary structure

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dotplot

Postscript

Window 8

Location 18,688,184 – 18,688,275
Length 91
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 80.43
Mean single sequence MFE -24.75
Consensus MFE -13.96
Energy contribution -13.47
Covariance contribution -0.50
Combinations/Pair 1.25
Mean z-score -2.12
Structure conservation index 0.56
SVM decision value 0.40
SVM RNA-class probability 0.720995
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18688184 91 - 27905053
C---G---UUGCCACUUGACGACGCAUAAAAAUCUUCGC-ACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUG-----UGCGUCUC--UGGGUC----------UGCC
.---(---(.(((....((.((((((((((((.((((..-..))))))))..(((((....)))))............))-----))))))))--..))).----------.)). ( -24.10)
>DroGri_CAF1 116358 111 - 1
UUCCA-UCUUGCCACUUGACAACGCAUACAAUUUUUUGCCACGAACUUUG-UGCAAUAAAAAUUGCAAUAAAUUGAAUUGCGAAAUGCGUUUC--GCUGUCUGCGAGUGUUUGAC
.....-((..((.((((((.(((((((....(((.((((.((((...)))-))))).)))..(((((((.......))))))).)))))))))--((.....))))))))..)). ( -25.40)
>DroEre_CAF1 121326 91 - 1
C---G---UUGCCACUUGACGACGCAUAAAAAUCUUCGC-ACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUG-----UGCGUCUU--UGGGUC----------UGGC
.---.---..((((((..(.((((((((((((.((((..-..))))))))..(((((....)))))............))-----)))))).)--..))).----------.))) ( -27.50)
>DroWil_CAF1 116020 106 - 1
C---GCAUUUGCUACUUGACGACGCAUAAAAAUCUUCGC-ACGAACUUUUUAGCAAUAAAAAUUGCAAUAAAUUGAAAUG-----UGUUUCGCACUCAGUCUCCAAGUGGUUGAC
.---...((.((((((((..(((...((((((..(((..-..))).))))))(((((....))))).......(((...(-----((.....)))))))))..)))))))).)). ( -21.50)
>DroYak_CAF1 119249 91 - 1
C---G---UUGCCACUUGACGACGCAUAAAAAUCUUCGC-ACGAAGUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUG-----UGCGUCUU--UGGGUC----------UGGC
.---.---..((((((..(.((((((((((((.((((..-..))))))))..(((((....)))))............))-----)))))).)--..))).----------.))) ( -27.50)
>DroAna_CAF1 112017 91 - 1
C---G---CUGCCACUUGACGACGCAUAAAAAUCUUCGC-ACGAACUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUG-----UGCGUCUC--UGGGUC----------UGGC
.---(---(((((....((.((((((((.(((..(((..-..)))..)))..(((((....)))))............))-----))))))))--..))).----------.))) ( -22.50)
>consensus
C___G___UUGCCACUUGACGACGCAUAAAAAUCUUCGC_ACGAACUUUUCAGCAAUAAAAAUUGCAAUAAAUUGAAAUG_____UGCGUCUC__UGGGUC__________UGGC
..........(((....((.((((((........((((...)))).......(((((....)))))...................))))))))....)))............... (-13.96 = -13.47 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:57 2006