Locus 7080

Sequence ID 3R_DroMel_CAF1
Location 18,686,924 – 18,687,022
Length 98
Max. P 0.573044
window11455

overview

Window 5

Location 18,686,924 – 18,687,022
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 97.14
Mean single sequence MFE -25.72
Consensus MFE -24.50
Energy contribution -23.86
Covariance contribution -0.64
Combinations/Pair 1.10
Mean z-score -1.12
Structure conservation index 0.95
SVM decision value 0.08
SVM RNA-class probability 0.573044
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18686924 98 - 27905053
GAUGAAGAGGGCCAAGAGUACUGUUGUUCCUUGACGGAAAUCCAAUUUCACUCAUAGUGUAAAUCGACAUUGAUUACAAUUGUGGAGGACCUGUGAAU
..((((((((..(((.(....).)))..))))...((....))...)))).((((((.((...((.((((((....))).))).))..)))))))).. ( -24.20)
>DroSec_CAF1 116806 98 - 1
GAUGAAGAGGGCCAAGAGCACUGUUGUUCCUUGACGGAAAUCCAAUUUCACUCAUAGUGUAAAUCGACAUUGAUUACAAUUGUGGAGGACCUGUGAAU
..((((((((..(((.(....).)))..))))...((....))...)))).((((((.((...((.((((((....))).))).))..)))))))).. ( -24.20)
>DroSim_CAF1 115809 98 - 1
GAUGAAGAGGGCCAAGAGCACUGUUGUUCCUUGACGGAAAUCCAAUUUCACUCAUAGUGUAAAUCGACAUUGAUUACAAUUGUGGAGGACCUGUGAAU
..((((((((..(((.(....).)))..))))...((....))...)))).((((((.((...((.((((((....))).))).))..)))))))).. ( -24.20)
>DroEre_CAF1 120108 98 - 1
GAUGGAGAGGGCCAAGAGCACUGUUGUUCCUUGGCGGAAAUCCAAUUUCACUCAUAGUGUAAAUCGACAUUGAUUACAAUUGUGGAGGGCCUGUGAAU
..((((....((((((((((....)))).)))))).....)))).......((((((.((...((.((((((....))).))).))..)))))))).. ( -29.50)
>DroYak_CAF1 118001 98 - 1
GAUGGAGAGGGCCAGGAGCAGUGUUGUUCCUUGACGGAAAUCCAAUUUCACUCAUAGUGUAAAUCGACAUUGAUUACAAUUGUGGAGGGCCUGUGAAU
..((((.....((((((((......))))))....))...)))).......((((((.((...((.((((((....))).))).))..)))))))).. ( -26.50)
>consensus
GAUGAAGAGGGCCAAGAGCACUGUUGUUCCUUGACGGAAAUCCAAUUUCACUCAUAGUGUAAAUCGACAUUGAUUACAAUUGUGGAGGACCUGUGAAU
..((((((((..(((.(....).)))..))))...((....))...)))).((((((.((...((.((((((....))).))).))..)))))))).. (-24.50 = -23.86 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:54 2006