Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,506,216 – 2,506,325 |
Length | 109 |
Max. P | 0.524275 |
Location | 2,506,216 – 2,506,325 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 73.76 |
Mean single sequence MFE | -19.04 |
Consensus MFE | -2.94 |
Energy contribution | -3.10 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.42 |
Mean z-score | -1.46 |
Structure conservation index | 0.15 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2506216 109 + 27905053 AUUGCCUUUAACA--UUAAAGUUUAAGUAUUUAUAUUUAUGUA-CAU-------ACGGCAGAAGCCGUUAAUUUACUUUCUCUAUGUAUUUACUCUUACACGAACAUAUUGCUGCAAUA ((((((((((...--.)))))....((((..(((((....(((-...-------(((((....))))).....))).......)))))..))))...................))))). ( -17.70) >DroSec_CAF1 35929 111 + 1 AUUGCCUUUAAAAAGUAUAAGUAUAACUAUUUAUAUUUAUGUA-CAU-------AUGGCAGAAACCGUUACCUUACUUUCUCUAUGUAUUUACUCUUACACAAAAAUAUUGCUGCAAUA (((((.......(((((((((((....)))))))))))..(((-.((-------((((.(((((..((......)))))))))))))...)))....................))))). ( -16.30) >DroSim_CAF1 34625 109 + 1 AUUGCCUUUAACA--UUAAAGUAUAAGUAUUUAUAUUUAUGUA-CAU-------AUGGCAGAAAUCGUUACCUUACUUUCUCUAUGUAUUUACUCUUACACGAAAAUAUUUCUGCAAUA ...........((--(.....((((((((....))))))))..-...-------)))((((((((.((......))((((....((((........)))).))))..)))))))).... ( -14.70) >DroEre_CAF1 35162 117 + 1 CUUGCCUUAAAAA--GUGAAGUAAAGGUAUUUAUACUUAUGUUUUGUGCGAGCUAUAUCUACCACCGUUCCCUUACUUUCUAUAUGUACAUAUUCUUGCAUCAAAAUGUUCCUGCAAUA .((((......((--((((((((....))))).)))))((((((((((((((..((((.(((.......................))).)))).)))))).))))))))....)))).. ( -18.30) >DroYak_CAF1 35074 112 + 1 CUCGCUUUGAAAA--GUAAAGUAAAAGUAUAUAUAUUUAUGUA-UGUGCGAGCUGUCGCAACAAACGUCCCCUUACUUUUUGUAAGUACUUACACUUACACCAAACUGUUGCGA----A (((((((((....--.))))))....(((((((((....))))-))))))))...((((((((...((......))....(((((((......)))))))......))))))))----. ( -28.20) >consensus AUUGCCUUUAAAA__UUAAAGUAUAAGUAUUUAUAUUUAUGUA_CAU_______AUGGCAGAAACCGUUACCUUACUUUCUCUAUGUAUUUACUCUUACACCAAAAUAUUGCUGCAAUA .....................((((((((....))))))))..............((((((.....((......)).........(((........))).........))))))..... ( -2.94 = -3.10 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:54 2006