Locus 708

Sequence ID 3R_DroMel_CAF1
Location 2,506,216 – 2,506,325
Length 109
Max. P 0.524275
window1121

overview

Window 1

Location 2,506,216 – 2,506,325
Length 109
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 73.76
Mean single sequence MFE -19.04
Consensus MFE -2.94
Energy contribution -3.10
Covariance contribution 0.16
Combinations/Pair 1.42
Mean z-score -1.46
Structure conservation index 0.15
SVM decision value -0.02
SVM RNA-class probability 0.524275
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2506216 109 + 27905053
AUUGCCUUUAACA--UUAAAGUUUAAGUAUUUAUAUUUAUGUA-CAU-------ACGGCAGAAGCCGUUAAUUUACUUUCUCUAUGUAUUUACUCUUACACGAACAUAUUGCUGCAAUA
((((((((((...--.)))))....((((..(((((....(((-...-------(((((....))))).....))).......)))))..))))...................))))). ( -17.70)
>DroSec_CAF1 35929 111 + 1
AUUGCCUUUAAAAAGUAUAAGUAUAACUAUUUAUAUUUAUGUA-CAU-------AUGGCAGAAACCGUUACCUUACUUUCUCUAUGUAUUUACUCUUACACAAAAAUAUUGCUGCAAUA
(((((.......(((((((((((....)))))))))))..(((-.((-------((((.(((((..((......)))))))))))))...)))....................))))). ( -16.30)
>DroSim_CAF1 34625 109 + 1
AUUGCCUUUAACA--UUAAAGUAUAAGUAUUUAUAUUUAUGUA-CAU-------AUGGCAGAAAUCGUUACCUUACUUUCUCUAUGUAUUUACUCUUACACGAAAAUAUUUCUGCAAUA
...........((--(.....((((((((....))))))))..-...-------)))((((((((.((......))((((....((((........)))).))))..)))))))).... ( -14.70)
>DroEre_CAF1 35162 117 + 1
CUUGCCUUAAAAA--GUGAAGUAAAGGUAUUUAUACUUAUGUUUUGUGCGAGCUAUAUCUACCACCGUUCCCUUACUUUCUAUAUGUACAUAUUCUUGCAUCAAAAUGUUCCUGCAAUA
.((((......((--((((((((....))))).)))))((((((((((((((..((((.(((.......................))).)))).)))))).))))))))....)))).. ( -18.30)
>DroYak_CAF1 35074 112 + 1
CUCGCUUUGAAAA--GUAAAGUAAAAGUAUAUAUAUUUAUGUA-UGUGCGAGCUGUCGCAACAAACGUCCCCUUACUUUUUGUAAGUACUUACACUUACACCAAACUGUUGCGA----A
(((((((((....--.))))))....(((((((((....))))-))))))))...((((((((...((......))....(((((((......)))))))......))))))))----. ( -28.20)
>consensus
AUUGCCUUUAAAA__UUAAAGUAUAAGUAUUUAUAUUUAUGUA_CAU_______AUGGCAGAAACCGUUACCUUACUUUCUCUAUGUAUUUACUCUUACACCAAAAUAUUGCUGCAAUA
.....................((((((((....))))))))..............((((((.....((......)).........(((........))).........))))))..... ( -2.94 =  -3.10 +   0.16) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:54 2006