| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,683,244 – 18,683,345 |
| Length | 101 |
| Max. P | 0.847790 |
| Location | 18,683,244 – 18,683,345 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.33 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -16.41 |
| Energy contribution | -16.60 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.847790 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18683244 101 + 27905053 GCCACGUUGGGCGAUAAUAACGCGGCAAACAAGCAAACAAGAUGAAAUACGCGUGCCGCAUGCGUAAUAAAUUUUAUCAACG-----UUCUAACC--A-----GAGCGCAUAC------- (((.(((((........))))).)))......((......(((((((((((((((...)))))))).....)))))))...(-----((((....--)-----))))))....------- ( -30.60) >DroVir_CAF1 244544 116 + 1 GCCACGUUGGGCGAUAAUAACGCGCCAAACAAGCAAACAAAAUGAAAUACGCGUGUCGCAUGCGUAAUAAAUUUUAUCAGUA--CCGUUAAGGCC--GUGUUGGAAUAGAUAUCAACCAA (((..(((.((((.........)))).)))........(((((....((((((((...))))))))....))))).......--.......))).--(.(((((........)))))).. ( -25.40) >DroGri_CAF1 112873 118 + 1 GCCACGUUGGGCGAUAAUAACGCGCCAAACAAGCAAACAAAAUGAAAUACGCGUGUCGCAUGCGUAAUAAAUUUUAUCAGUUACCUGCUAAGGCC--GUGUUGCCAUAGGUAUCAUACCG (((..(((.((((.........)))).))).(((((((...((((((((((((((...)))))))).....))))))..)))...))))..))).--(((.((((...)))).))).... ( -29.60) >DroWil_CAF1 112454 92 + 1 GCCACGUUGGGCGAUAAUAAUGCGCCAAACAAGCAAACAAGAUGAAAUACGCGUGCCGCAUGCGUAAUAAAUUUUAUCAUCA-----U-CAAGCA--A-----AA--------------- ((...(((.((((.........)))).)))..........(((((((((((((((...)))))))).....)))))))....-----.-...)).--.-----..--------------- ( -22.50) >DroMoj_CAF1 125692 118 + 1 GCCACGUUGGGCGAUAAUAACGCGCCAAACAAGUAAACAAAAUGAAAUACGCGUGUCGCAUGCCUAAUAAAUUGUAUCAGCU--CCACUAAGUCCCGCUGCUGGCAUAGAUACGAAACUA .....((((((((......(((((.........................)))))......))))))))...(((((((....--(((...((.....))..)))....)))))))..... ( -24.51) >DroAna_CAF1 107531 101 + 1 GCCACGUUGGGCGAUAAUAACGCGGCAAACAAGCAAACAAGAUGAAAUACGCGUGCCGCAUGCGUAAUAAAUUUUAUCAGCA-----UCCCAGCC--A-----GAGCGCAUAC------- (((.(((((........))))).)))......((......(((((((((((((((...)))))))).....))))))).((.-----((......--.-----))))))....------- ( -27.40) >consensus GCCACGUUGGGCGAUAAUAACGCGCCAAACAAGCAAACAAAAUGAAAUACGCGUGCCGCAUGCGUAAUAAAUUUUAUCAGCA_____UUAAAGCC__A_____GAAUAGAUAC_______ (((......)))(((((....((.........)).............((((((((...)))))))).......))))).......................................... (-16.41 = -16.60 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:53 2006