Locus 7078

Sequence ID 3R_DroMel_CAF1
Location 18,682,785 – 18,682,878
Length 93
Max. P 0.780018
window11453

overview

Window 3

Location 18,682,785 – 18,682,878
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 94.62
Mean single sequence MFE -26.83
Consensus MFE -23.37
Energy contribution -23.57
Covariance contribution 0.20
Combinations/Pair 1.04
Mean z-score -1.59
Structure conservation index 0.87
SVM decision value 0.55
SVM RNA-class probability 0.780018
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18682785 93 - 27905053
GAUGAUGCUGAUGACGGCGCCUCUCUGGGGGCGUUGUAUCGAAAUUCGGCACAUUUCAACUGAUUAACAUACUUUUCUGGCAUUUUACCAAGA
...((((((((((.(((((((((....)))))))))))))(((((.......))))).....................))))))......... ( -25.30)
>DroSec_CAF1 112672 91 - 1
GAUGAUGCUGAUGACGGCGCCUCUCUGGGGGCGUUGUAUCGAAAUUCUGC--AUUUCAACUGAUUAACAUACUUUUCUGGCAUUUUACCAGGA
((.((((((((((.(((((((((....)))))))))))))).......))--))))).................((((((.......)))))) ( -26.81)
>DroSim_CAF1 111650 91 - 1
GAUGAUGCUGAUGACGGCGCCUCUCUGGGGGCGUUGUAUCGAAAUUCGGC--AUUUCAACUGAUUAACAUACUUUUCUGGCAUUUUACCAGGA
((.((((((((..((((((((((....))))))))))........)))))--))))).................((((((.......)))))) ( -30.30)
>DroEre_CAF1 115952 91 - 1
GAUGAUGCUGAUGACGGCGCCUCUCUGGGGGCGUUGUAUCGAAAUUCGGC--AUUUCAACUGAUUAACAUACUUUUCUGGCAUUUUACCAGGA
((.((((((((..((((((((((....))))))))))........)))))--))))).................((((((.......)))))) ( -30.30)
>DroYak_CAF1 113807 91 - 1
GAUGAUGCUGAUGACGGCGCCUCUCUGGGGGCGUUGUAUCGAAAUUCGGC--AUUUCAACUGAUUAACAUACUUUUCUGGCAUUUUACCCGGC
((.((((((((..((((((((((....))))))))))........)))))--)))))...................((((........)))). ( -27.50)
>DroAna_CAF1 107182 91 - 1
GAUGAUGUUGAUGACGGCGUCUCUCAUGGGGCGUAGUAUCGAAAUUUGGC--AUUUCAACUGAUUAGCAUACUUUUCUGCCAUUUUACCUGGA
.......((((((...(((((((....)))))))..))))))((..((((--(........((..((....))..)))))))..))....... ( -20.80)
>consensus
GAUGAUGCUGAUGACGGCGCCUCUCUGGGGGCGUUGUAUCGAAAUUCGGC__AUUUCAACUGAUUAACAUACUUUUCUGGCAUUUUACCAGGA
...((((((((((.(((((((((....)))))))))))))(((((.......))))).....................))))))......... (-23.37 = -23.57 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:52 2006