Locus 7077

Sequence ID 3R_DroMel_CAF1
Location 18,681,446 – 18,681,537
Length 91
Max. P 0.888823
window11452

overview

Window 2

Location 18,681,446 – 18,681,537
Length 91
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 79.23
Mean single sequence MFE -27.36
Consensus MFE -15.16
Energy contribution -14.60
Covariance contribution -0.56
Combinations/Pair 1.11
Mean z-score -2.19
Structure conservation index 0.55
SVM decision value 0.95
SVM RNA-class probability 0.888823
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18681446 91 + 27905053
CAUGCGUAAUGGUGUAAUAAUACCUCCUGGCUAGCUAGCUGCAUAGCUCUAUAG--CCGUAUAGCUGGAU--AGCUGGAU--AGUUGGAUAGCCGUC
..........(((((....)))))....(((((.(((((((..(((((...(((--(......))))...--)))))..)--)))))).)))))... ( -31.10)
>DroSec_CAF1 111344 87 + 1
CAUGCGUAAUGGUGUAAUAAUACCUCCUGGCU----AGCUGCAUAGCUCUAUAG--CCGUAUAGCUGGAU--AGCUGGAU--AGCUGGAUAGCCGUC
...(((....(((((....)))))..(((.((----(((((..(((((...(((--(......))))...--)))))..)--)))))).))).))). ( -26.50)
>DroSim_CAF1 110321 79 + 1
CAUGCGUAAUGGUGUAAUAAUACCUCCUGGCU----AGCUGCAUAGCUCUAUAG--CCGUAUAGCUGGAU--A----------GCUGGAUAGCCGUC
...(((....(((((....)))))..(((.((----(((((..(((((.(((..--..))).)))))..)--)----------))))).))).))). ( -22.40)
>DroEre_CAF1 114630 73 + 1
CAUGCGUAAUGGUGUAAUAAUACCUCCUGGCG----AGCUGCAUAGCUCUAUAUG-CCAUAUAGCUGGAU--GGCUGGAU-----------------
..........(((((....)))))((((((((----((((....))))).....)-)))...((((....--))))))).----------------- ( -19.20)
>DroYak_CAF1 112449 91 + 1
CAUGCGUAAUGGUGUAAUAAUACCUCCUGGCU----AGCUGCAUAGCUCCAUAGCUCUAUGGAGCUGGAUAUAGCUGGAUAUAGCUAGGUA--UGCU
...(((((..(((((....))))).(((((((----(((((..((((((((((....))))))))))....)))))......)))))))))--))). ( -37.60)
>consensus
CAUGCGUAAUGGUGUAAUAAUACCUCCUGGCU____AGCUGCAUAGCUCUAUAG__CCGUAUAGCUGGAU__AGCUGGAU__AGCUGGAUAGCCGUC
.((((.....(((((....)))))....(((......)))))))((((.(((......))).))))............................... (-15.16 = -14.60 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:51 2006