Locus 7076

Sequence ID 3R_DroMel_CAF1
Location 18,680,833 – 18,680,929
Length 96
Max. P 0.908026
window11451

overview

Window 1

Location 18,680,833 – 18,680,929
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 93.11
Mean single sequence MFE -28.50
Consensus MFE -23.14
Energy contribution -24.58
Covariance contribution 1.44
Combinations/Pair 1.04
Mean z-score -1.84
Structure conservation index 0.81
SVM decision value 1.06
SVM RNA-class probability 0.908026
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18680833 96 - 27905053
AAAUCUCCAGAUUUGGCUGCGUUUCGGCCAAGAUAUCACUGCUGCUAGAGAGACAAUGAUGGGCCAAGUAAAUGAGCCUUCUCGUUGACAGACCAA
...(((((((..(((((((.....)))))))(....)....)))...))))..((((((.((((((......)).))))..))))))......... ( -24.10)
>DroSec_CAF1 110770 96 - 1
AAAUCUCCAGAUUUGGCUGCAUUUCGGCCAAGAUAUCACUGCUGCUGGAGAGACAAUGAUGGGCCAAGUAAAUGAGCCUUCUCGUUGACAGACCAA
...(((((((..(((((((.....)))))))(....).......)))))))..((((((.((((((......)).))))..))))))......... ( -30.60)
>DroSim_CAF1 109737 96 - 1
AAAUCUCCAGUUUUGGCUGCAUUUCGGCCAAGAUAUCACUGCUGCUGGAGAGACAAUGAUGGGCCAAGUAAAUGAGCCUUCUCGUUGACAGACCAA
...((((((((((((((((.....))))))))...........))))))))..((((((.((((((......)).))))..))))))......... ( -32.10)
>DroEre_CAF1 114043 94 - 1
AAAUUUGCAGAUUUGGCGGCAAAUCGGCCAAGAUAUCACUGCUGCUGGA--GACAAUGAUGGGCCAAGUAAAUGAGCCUUCUCGUUGACAGGCCAA
.........((((((....))))))((((.........((.(....).)--).((((((.((((((......)).))))..))))))...)))).. ( -27.40)
>DroYak_CAF1 111861 94 - 1
AAAACUCCAGAUUUGGCGGCAAUUUGGCCAAGAUAUCACUGCUGCUGGA--GACAAUGAUGGGCCAAGUAAAUGAGCCUUCUCGUUGACAGGACAA
....((((((....((((((......)))..(....)...))).)))))--).((((((.((((((......)).))))..))))))......... ( -28.30)
>consensus
AAAUCUCCAGAUUUGGCUGCAUUUCGGCCAAGAUAUCACUGCUGCUGGAGAGACAAUGAUGGGCCAAGUAAAUGAGCCUUCUCGUUGACAGACCAA
...(((((((..(((((((.....)))))))(....).......)))))))..((((((.((((((......)).))))..))))))......... (-23.14 = -24.58 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:50 2006