Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,678,174 – 18,678,277 |
Length | 103 |
Max. P | 0.768964 |
Location | 18,678,174 – 18,678,277 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 89.00 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -19.93 |
Energy contribution | -20.27 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.24 |
Structure conservation index | 0.83 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18678174 103 - 27905053 CACCAGCAAUCCAUGCCGGUAUUCAAACACAGAAUUGCCGGAAUCCCAAGAACCGGCCAAACACCCACAGAUGGCCCAUAAUGAUGGCCACCCGGUCAAAACA ...........(((.(((((((((.......))).)))))).............(((((............)))))....))).(((((....)))))..... ( -23.20) >DroSec_CAF1 108146 94 - 1 ---------UCCAACCCGGUAUUCAAACACAGAAUUGCCGGAAUCCCAAGACCCGUCCAAGCACCCACAGAUGGCCCAUAAUGAUGGCCGCCUGGUCAAAACA ---------......(((((((((.......))).))))))........(((..((....)).....(((.(((((.........))))).))))))...... ( -22.60) >DroSim_CAF1 107067 103 - 1 AACCAGCAAUCCAGCCCGGUAUUCAAACACAGAAUUGCCGGAAUCCCAAGACCCGGCCAAACACCCACAGAUGGCCCAUAAUGAUGGCCGCCUGGUCAAAACA .....((......))(((((((((.......))).))))))........((((.(((....(.......)..((((.........))))))).))))...... ( -26.50) >consensus _ACCAGCAAUCCAACCCGGUAUUCAAACACAGAAUUGCCGGAAUCCCAAGACCCGGCCAAACACCCACAGAUGGCCCAUAAUGAUGGCCGCCUGGUCAAAACA ...............(((((((((.......))).)))))).............(((((............)))))........(((((....)))))..... (-19.93 = -20.27 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:48 2006