Locus 7073

Sequence ID 3R_DroMel_CAF1
Location 18,676,810 – 18,676,915
Length 105
Max. P 0.871388
window11447

overview

Window 7

Location 18,676,810 – 18,676,915
Length 105
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 74.21
Mean single sequence MFE -19.38
Consensus MFE -2.16
Energy contribution -2.64
Covariance contribution 0.48
Combinations/Pair 1.20
Mean z-score -1.77
Structure conservation index 0.11
SVM decision value 0.87
SVM RNA-class probability 0.871388
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18676810 105 - 27905053
UCCUUGAGAAUAAUAUACC-AAAGGCAGUGAGAAAAAAAACUACAGAACUCUCGAACUGCAGA------AAAGAAUCUUACG----CCUUA--AUGAAUAUAACACAUUUAUAAAGGA
(((((..............-.(((((.((((((.......((.(((..........))).)).------......)))))))----)))).--((((((.......)))))).))))) ( -18.44)
>DroSec_CAF1 106772 98 - 1
UCCUUGAGAAUAAUAUACC-AAAGGCAGUGAGAA---AAACUGCAGGACUCUCGAACUGUAGA------AAAGAAUCUCACG----CCUUA--ACGAAUGUAACACAUUUGAAA----
...................-.(((((.((((((.---...((((((..(....)..)))))).------......)))))))----)))).--.((((((.....))))))...---- ( -26.00)
>DroSim_CAF1 105680 99 - 1
UCCUUGAGAAUAAUAUACC-AAAGGCAGUGAGAAA--AAACUACAGGACUCUCAAAGUACAGA------AAAUAAUCUCACG----CCUUA--AUGAAUGUAACACAUUUGAAA----
...................-.(((((.((((((..--..........(((.....))).....------......)))))))----)))).--..(((((.....)))))....---- ( -16.80)
>DroEre_CAF1 109977 109 - 1
UCCUUGAGAAUAGUGCACC-AAAGGCAGUGAGAA---AAACUACAGGACUGCCAAA-AACAGAACUACCAAAGAUUCUAAUG----GUUUAUUAGGCAUGUUAUACAUUUUUAAGGUU
.((((((((((((((.(((-(..((((((.....---..........))))))...-...((((((.....)).))))..))----)).)))))....((.....))))))))))).. ( -23.56)
>DroYak_CAF1 107645 116 - 1
UCCUUGAGAAUAAUACACAGAAAGGUAGUGAGAAA--AAACUACAGGACUCCCGAAUGACAAAAUUACAAAAGAUACUACUAAGAUAUUUACUAUGAAUAUAAUACAUUGUUAAUGGU
.((((((.(((............(((((((.....--........((....)).(((......)))........)))))))...((((((.....)))))).....))).)))).)). ( -12.10)
>consensus
UCCUUGAGAAUAAUAUACC_AAAGGCAGUGAGAAA__AAACUACAGGACUCUCGAACUACAGA______AAAGAAUCUAACG____CCUUA__AUGAAUGUAACACAUUUGUAA_G__
.((((................))))..((((((..........................................))))))..................................... ( -2.16 =  -2.64 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:47 2006