| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,676,511 – 18,676,608 |
| Length | 97 |
| Max. P | 0.829839 |
| Location | 18,676,511 – 18,676,608 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 71.24 |
| Mean single sequence MFE | -32.60 |
| Consensus MFE | -16.47 |
| Energy contribution | -19.03 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829839 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18676511 97 - 27905053 GGCGCAGAAGAAGCUGCGUCACCCUUUGCGGUUUGCCACCAGACAAUGACUGUAGCAUCCUGCCACACCAGGAGCAACAGCCACAGCA--------GCUGGAGCU (((((((......))))))).((..((((.(((((....)))))..((.((((.((.(((((......))))))).)))).))..)))--------)..)).... ( -35.30) >DroYak_CAF1 107350 95 - 1 GGCGCAGAAGAAGCUGCGUCACCCUUUGCGGU-UGCCACCAGGCAAUGAAUGUAGCAUCCUGCCACACCAGGAGCAACUGCACCAACAGCAGCAGG--------- (((((((......)))))))..(((((((.((-((((....))))))...(((((..(((((......)))))....)))))......)))).)))--------- ( -36.40) >DroAna_CAF1 101164 83 - 1 GGCGCAGAAGAAGCUGUGUCACCCUUUGCGAG-UGCCACCAGGCAAUGAGAGGAGCCACG-G--UUACCAAA---AACUGCAACAGCA--------GA------- (((((((......)))))))..(((((.((..-((((....)))).)))))))(((....-)--))......---..((((....)))--------).------- ( -26.10) >consensus GGCGCAGAAGAAGCUGCGUCACCCUUUGCGGU_UGCCACCAGGCAAUGAAUGUAGCAUCCUGCCACACCAGGAGCAACUGCAACAGCA________G________ (((((((......))))))).......((....((((....)))).....(((.((.(((((......))))))).)))))........................ (-16.47 = -19.03 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:46 2006