Locus 7071

Sequence ID 3R_DroMel_CAF1
Location 18,676,321 – 18,676,419
Length 98
Max. P 0.871211
window11445

overview

Window 5

Location 18,676,321 – 18,676,419
Length 98
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 89.01
Mean single sequence MFE -32.95
Consensus MFE -25.84
Energy contribution -24.65
Covariance contribution -1.19
Combinations/Pair 1.23
Mean z-score -3.18
Structure conservation index 0.78
SVM decision value 0.87
SVM RNA-class probability 0.871211
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18676321 98 - 27905053
AAAAUAUGCAAAGUGUUUGUUCGCCUGCUGGCCGAA-CGGCAAGUGAGAAUGUGAAAUGACAUUU-UCGGGGCGUGCCGAAGGCAAAAAGA--------AACUAUGUU
.......(((.(((.(((...((((((((.(((...-.))).)))((((((((......))))))-)).)))))((((...))))...)))--------.))).))). ( -29.20)
>DroSec_CAF1 106296 98 - 1
AAAAUAUGCAAAGUGUUUGUUCGCCUGCUGGCCGAA-CGGCAAGUGAGAAUGUGAAAUGACAUUU-UCGGGGCGUGCCGAAGGCGAAAAGG--------AACUUUGUU
.......(((((((.....(((((((..((((...(-((.(...(((((((((......))))))-))).).))))))).)))))))....--------.))))))). ( -37.30)
>DroSim_CAF1 105205 98 - 1
AAAAUAUGCAAAGUGUUUGUUCGCCUGCUGGCCGAA-CGGCAAGUGAGAAUGUGAAAUGACAUUU-UCGGGGCGUGCCAAAGGCGAAAAGG--------AACUAUGUU
.......(((.(((.....(((((((..((((...(-((.(...(((((((((......))))))-))).).))))))).)))))))....--------.))).))). ( -34.50)
>DroEre_CAF1 109462 97 - 1
AAAAUAUGCAAAGUGUUUGUUCGCCUGCUGGCCGAA-CGGCAAGUGAGAAUGUGAAAUGACAUUU-UCGGGGCGUGCCGCAGGCAAAAGG---------AACUAUGCU
.......(((.(((.((..((.((((((.(((...(-((.(...(((((((((......))))))-))).).)))))))))))).))..)---------)))).))). ( -34.60)
>DroYak_CAF1 107151 107 - 1
AAAAUAUGCAAAGUGUUUGUUCGCCUGCUGGCCGAACCGGCAAGUGAGAAUGUGAAAUGACAUUU-UCGGGGCGUGCCGAAGGCAAAAAAAAAGAAAUGUACUAUGUU
.......(((.((((....((((((((((((.....)))))...(((((((((......))))))-))))))).((((...))))........)))...)))).))). ( -31.20)
>DroAna_CAF1 101005 95 - 1
AAAAUAUGCAAAGUGUUUGUUCGCCUGUUGGCCGC--UGGCAAACGAGAAUGUGAAAUGACAUUUUUUGGGGUGUGCCGAAGGCAGCA-----------AACUCUGUU
...........((.(((((((.((((.((((((((--(..((...((((((((......)))))))))).)))).)))))))))))))-----------))).))... ( -30.90)
>consensus
AAAAUAUGCAAAGUGUUUGUUCGCCUGCUGGCCGAA_CGGCAAGUGAGAAUGUGAAAUGACAUUU_UCGGGGCGUGCCGAAGGCAAAAAG_________AACUAUGUU
.......(((.(((.......((((((((.((((...)))).)))((((((((......)))))).)).)))))((((...))))...............))).))). (-25.84 = -24.65 +  -1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:45 2006