Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,676,025 – 18,676,129 |
Length | 104 |
Max. P | 0.987710 |
Location | 18,676,025 – 18,676,129 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 95.51 |
Mean single sequence MFE | -31.43 |
Consensus MFE | -29.77 |
Energy contribution | -30.28 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.70 |
Structure conservation index | 0.95 |
SVM decision value | 2.09 |
SVM RNA-class probability | 0.987710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18676025 104 - 27905053 AAAACAGAGAGGAGCUGGUGCCAAGCCAACUCUUCUCGAGGCUGGCCACAACGAAAGGAUAUUGCAAAUUUACCAAACAGCGGAAGCGGAAGUGCAAAACUAGC ......((((((((.((((.....)))).))))))))...(((((......(....)....(((((...((.((.....((....)))))).)))))..))))) ( -32.20) >DroSec_CAF1 106006 104 - 1 AAAACCGAGAGGAGCUGGUGCCAAGCCAACUCUUCUCGAGGCUGGCCACAACGAAAGGAUAUUGCAAAUUUACCAAACAGCGGAAGCGGAAGUGCAAAACUAGC .....(((((((((.((((.....)))).)))))))))..(((((......(....)....(((((...((.((.....((....)))))).)))))..))))) ( -34.10) >DroSim_CAF1 104915 104 - 1 AAAACCGAGAGGAGCUGGUGCCAAGCCAACUCUUCUCGAGGCUGGCCACAACGAAAGGAUAUUGCAAAUUUACCAAACAGCGGAAGCGGAAGUGCAAAACUAGC .....(((((((((.((((.....)))).)))))))))..(((((......(....)....(((((...((.((.....((....)))))).)))))..))))) ( -34.10) >DroEre_CAF1 109165 103 - 1 AAA-AAGAGUGGAGAUGGUGCCAAGCCAACUCGUCUCGAGGCUGGCUACAACGCAAGGAUAUUGCAAAUUUACCAAACAACGGAAGCGGAAGUGCAAAACUAGC ...-..(((..(((.((((.....)))).)))..)))...(((((......(....)....((((.......((.......))..((....))))))..))))) ( -25.30) >consensus AAAACAGAGAGGAGCUGGUGCCAAGCCAACUCUUCUCGAGGCUGGCCACAACGAAAGGAUAUUGCAAAUUUACCAAACAGCGGAAGCGGAAGUGCAAAACUAGC ......((((((((.((((.....)))).))))))))...(((((......(....)....((((.......((.......))..((....))))))..))))) (-29.77 = -30.28 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:44 2006