Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,504,627 – 2,504,718 |
Length | 91 |
Max. P | 0.522673 |
Location | 2,504,627 – 2,504,718 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 77.03 |
Mean single sequence MFE | -21.70 |
Consensus MFE | -1.97 |
Energy contribution | -2.65 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.17 |
Mean z-score | -1.38 |
Structure conservation index | 0.09 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522673 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2504627 91 - 27905053 CAUUAAU-AAGGAUCAUUUUAGAGAUC----------------------UGAUCAUCCCCAGCCAGUUCCACACCAGCUCAUUGCAUAAUUUCAAGUUCCUUCAUAGAACUCCC .......-..((((....((((....)----------------------)))..))))..................((.....)).........(((((.......)))))... ( -9.30) >DroSec_CAF1 34340 102 - 1 CAUUAAUGAAGGAUCAUUUUAUAGAACUGGUCU-----------ACUACUGAUCAUCCCCAGCCAGUUCCACGCCAGCUCAUUGCAUAAUUUCAAGUCC-CUCAUAGAACUCCC .....((((.((((.........((((((((..-----------.................)))))))).......((.....))..........))))-.))))......... ( -18.61) >DroSim_CAF1 32775 113 - 1 CAUUAAUGAAGGAUCAUUUUAGAGAACUGGUCUUGGUUAUAUCAACUACUGAUCAUCCCCAGCCAGUUUCACGCCAGCUCAUUGCAUAAUUUCAAGUCC-CUCAUAGAACUCCC .....((((.((((.......((((.(((((..(((..((((((.....)))).))..))))))))))))......((.....))..........))))-.))))......... ( -23.80) >DroEre_CAF1 33557 113 - 1 CAGUAAUGAAGGACCAUUUGGGGGAACAGCUUUCGGGUAUAUCAACUUCCGAUCAUCCCCAGCCAGUUCCACACCAGCCCAUUGCGUAACUUCAAGUCC-CUCGUAGAACUCCC .....((((.((((....(((.(((((.(((...(((...(((.......)))...))).)))..)))))...)))((.....))..........))))-.))))......... ( -27.30) >DroYak_CAF1 33422 113 - 1 CAGUAGUAAAGGAUCAUUUGGGAGAACAGCUUUCGAUUCUAUCAACUGGUGAGCAUCCCCAGCCAGGUGCACACCAGUUCAUUGCAUAAUUUCAUUCCC-UUCAUAGAACUACC ..(((((..((((((....(..((.....))..)))))))...((((((((.(((((........))))).))))))))....................-........))))). ( -29.50) >consensus CAUUAAUGAAGGAUCAUUUUAGAGAACAGCUCU_G__U_UAUCAACUACUGAUCAUCCCCAGCCAGUUCCACACCAGCUCAUUGCAUAAUUUCAAGUCC_CUCAUAGAACUCCC ......((((((((((.................................)))))......................((.....))....))))).................... ( -1.97 = -2.65 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:53 2006