Locus 7068

Sequence ID 3R_DroMel_CAF1
Location 18,672,989 – 18,673,079
Length 90
Max. P 0.811693
window11441

overview

Window 1

Location 18,672,989 – 18,673,079
Length 90
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 78.20
Mean single sequence MFE -30.60
Consensus MFE -18.61
Energy contribution -20.28
Covariance contribution 1.67
Combinations/Pair 1.12
Mean z-score -1.78
Structure conservation index 0.61
SVM decision value 0.65
SVM RNA-class probability 0.811693
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18672989 90 + 27905053
CUCG-------------------CAGUGCAGUGAAAGUCAAACGGAAACGGAAACGGAUAUGCCUCCAGGCGGAAUGACAGA-AAUUGUCACGUUUCUGC-CUUUGAGUGU
((((-------------------.((.(((............((....))((((((....((((....))))...((((((.-..)))))))))))))))-)).))))... ( -27.20)
>DroPse_CAF1 122586 86 + 1
AGUA-------------------CGUCGCAGUGAAAGUCAAACGGA------AACGGAUACGCCUCCAGGCGGAAUGACAGAAAAUUGUCACGUAGCCGCUCUUUGAGUGU
..((-------------------(((.(((((....((((..((..------..))....((((....))))...)))).....))))).)))))..(((((...))))). ( -28.30)
>DroSec_CAF1 102901 85 + 1
CUCG-------------------CA-----GUGAAAGUCAAACGGAAACGGAAACGGAUAUGCCUCCAGGCGGAAUGACAGA-AAUUGUCACGUUUCUGC-CUUUGAGUGU
...(-------------------((-----.(.((((.((..((....))((((((....((((....))))...((((((.-..)))))))))))))).-)))).).))) ( -26.10)
>DroEre_CAF1 105873 108 + 1
CUCAC-ACUCGCAGUGGCAGUGGCAGUGCAGUGAAAGUCAAACGGAAACGGAAACGGAUACGCCUCCAGGCGGAAUGACAGA-AAUUGUCACGUUUCUGC-CUUUGAGUGU
...((-(((((....(((((..((.(((((((....((((..((....))..........((((....))))...))))...-.)))).)))))..))))-)..))))))) ( -40.90)
>DroYak_CAF1 103510 102 + 1
UUCGC-AUUCGCAGU------GGCAGUGCAGUGAAAGUCAAACGGAAACGGAAACGGAUACGCCUCCAGGCGGAAUGACAGA-AAUUGUCACGUUUCUGC-CUUUGAGUGU
...((-((((((((.------.((.(((((((....((((..((....))..........((((....))))...))))...-.)))).)))))..))))-....)))))) ( -33.60)
>DroAna_CAF1 97658 98 + 1
CUCGCUACUCGCAGU------GCACUCGCAGUGAAAGUCAAACGGA------AACGGAUACGCCCCGAGGCGGAAUGACAGA-AAUUGUCACGUAGCUGCUCUUUGGAUGU
...(((((...((.(------((....))).))...((((..((..------..))....((((....))))...))))...-.........))))).............. ( -27.50)
>consensus
CUCG___________________CAGUGCAGUGAAAGUCAAACGGAAACGGAAACGGAUACGCCUCCAGGCGGAAUGACAGA_AAUUGUCACGUUUCUGC_CUUUGAGUGU
...........................(((.(.((((.....((((((((..........((((....))))...((((((....))))))))))))))..)))).).))) (-18.61 = -20.28 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:41 2006