Locus 7067

Sequence ID 3R_DroMel_CAF1
Location 18,671,993 – 18,672,103
Length 110
Max. P 0.764390
window11440

overview

Window 0

Location 18,671,993 – 18,672,103
Length 110
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 90.48
Mean single sequence MFE -23.70
Consensus MFE -18.75
Energy contribution -18.20
Covariance contribution -0.55
Combinations/Pair 1.14
Mean z-score -2.53
Structure conservation index 0.79
SVM decision value 0.51
SVM RNA-class probability 0.764390
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18671993 110 + 27905053
AAUGAAUCAUGGAAAAUAAAUUGUAUACAAAUUUAUACAAAGCCUGUUCGGAAA-AAGCAAAAGCAACUUAUUUAUGAAUUUUGAUUAGGCUUUUAUGUGUCUAUGAAU--AU
......(((((((..((((((((((((......)))))))((((((.((((((.-..((....))..(........)..)))))).)))))))))))...)))))))..--.. ( -26.20)
>DroEre_CAF1 104861 110 + 1
CAUGAAUCAUGGCAAAUAAUUUGUAUACAAAUUUAUACAAAGCCUGUUCAGGAA-AAGCAAAACCAACAUAUUUAUGAAUUCUGAUUAGGCUUUUAUGUGUAUGUGAAU--AU
((((...)))).......(((..((((((....((((.((((((((.((((((.-...(((((........))).))..)))))).))))))))))))))))))..)))--.. ( -23.80)
>DroYak_CAF1 102482 113 + 1
AAUGAAUCAUGGCAAAUAAUUUGUAUACAAAUUUAUACAAAGCCUGUGCAGGAAAAAGCAAAACUAACAUAUUUAUGAAUUCUGAUUAGGCUUUUAUGGGUAUAUGAAUAUAU
......(((((((..((((((((((((......))))))))(((((..(((((...((.....))..(((....)))..)))))..)))))..))))..)).)))))...... ( -21.10)
>consensus
AAUGAAUCAUGGCAAAUAAUUUGUAUACAAAUUUAUACAAAGCCUGUUCAGGAA_AAGCAAAACCAACAUAUUUAUGAAUUCUGAUUAGGCUUUUAUGUGUAUAUGAAU__AU
......(((((....((((.(((((((......)))))))((((((.((((((..........................)))))).)))))).)))).....)))))...... (-18.75 = -18.20 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:40 2006