Locus 7065

Sequence ID	3R_DroMel_CAF1
Location	18,662,633 – 18,662,747
Length	114
Max. P	0.600731

overview

Window 7

Location	18,662,633 – 18,662,747
Length	114
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	74.69
Mean single sequence MFE	-13.71
Consensus MFE	-11.00
Energy contribution	-10.62
Covariance contribution	-0.38
Combinations/Pair	1.11
Mean z-score	-1.14
Structure conservation index	0.80
SVM decision value	0.14
SVM RNA-class probability	0.600731
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18662633 114 + 27905053
AUUAAUAUGCAAAUUUCGUUAAUGUGUACACAUUACAAAGGCACCAGAAUAGCCCCGACCCAGCCCACGCAUCCUUACAUCCAGCCCAUCCUUCCCCCGAAGGAUCUCACAGCA
......((((.......((.(((((....)))))))...(((.........)))..............))))...........((..(((((((....)))))))......)). ( -18.00)
>DroSec_CAF1 92742 87 + 1
AUUAAUAUGCAAAUUUCGUUAAUGUGUACACAUUACAAAGGUACCACAGU--------------CCA------------CCCAUCCCAUCCUUCCCACAAAGGAUCUCAC-GUC
.................((.(((((....)))))))...((.((....))--------------)).------------........((((((......)))))).....-... (  -9.50)
>DroSim_CAF1 90359 88 + 1
AUUAAUAUGCAAAUUUGGUUAAUGUGUACACAUUACAAAGGCACCACAAU--------------CCA------------CCCAUCCCAUCCUUCCCGCAAAGGAUCUCACAGCC
.......(((...((((..((((((....)))))))))).))).......--------------...------------........((((((......))))))......... ( -12.90)
>DroEre_CAF1 95388 105 + 1
AUUAAUAUGCAAAUUUCGUUAAUGUGUACACAUUACAAAGGCACCAGAAUAGCACCGACCCUUGCCACCCAUCCUU---------UCGUCCUUCCCCCAAAGGAUCUCACAGCA
.......(((.......((.(((((....)))))))...((((..((.............))))))....((((((---------(.(........).)))))))......))) ( -14.42)
>consensus
AUUAAUAUGCAAAUUUCGUUAAUGUGUACACAUUACAAAGGCACCACAAU______________CCA____________CCCAUCCCAUCCUUCCCCCAAAGGAUCUCACAGCA
.......(((...(((.((.(((((....)))))))))).)))............................................((((((......))))))......... (-11.00 = -10.62 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:37 2006