Locus 7064

Sequence ID 3R_DroMel_CAF1
Location 18,661,700 – 18,661,791
Length 91
Max. P 0.525143
window11436

overview

Window 6

Location 18,661,700 – 18,661,791
Length 91
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 83.82
Mean single sequence MFE -25.82
Consensus MFE -18.97
Energy contribution -19.50
Covariance contribution 0.53
Combinations/Pair 1.05
Mean z-score -1.66
Structure conservation index 0.73
SVM decision value -0.02
SVM RNA-class probability 0.525143
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18661700 91 - 27905053
GCCCAUUGGGCUGG--GAGUGGUCAAGUCAAUUCAGUUGGAGCAGAACAAUUGAAAUAAUUGCCCAAAAUGUGGGUG-GAGCUACAACGAGAGC-----
((((...))))..(--..(((((........((((((((........))))))))....(..((((.....))))..-).)))))..)......----- ( -26.30)
>DroSec_CAF1 91780 92 - 1
GCCCAUUGGGCUGG--GAGUGGUCAAGUCAAGUCAGUUGGAGCAGAACAAUUGAAAUAAUUGCCCAAAAUGUGGGUGGGAGCUACAGCUGGAGC-----
(((((((((((...--((.(.....).))...(((((((........))))))).......)))))....))))))...(((....))).....----- ( -26.20)
>DroSim_CAF1 89402 92 - 1
GCCCAUUGGGCUGG--GAGUGGUCAAGUCAAGUCAGUUGGAGCAGAACAAUUGAAAUAAUUGCCCAAAAUGUGGGUGGGAGCUACAGCUGGAGC-----
(((((((((((...--((.(.....).))...(((((((........))))))).......)))))....))))))...(((....))).....----- ( -26.20)
>DroEre_CAF1 94401 91 - 1
GCCCAGUGGGCUGG--GAGUGGUCAAGUCAAGUCAGUUGGAGCAGAACAAUUGAAAUAAUUGCCCAAAAUGUGGGUG-GAGCUGCACAUGGAGC-----
.(((((....))))--).(..((.........(((((((........))))))).....(..((((.....))))..-).))..).........----- ( -27.50)
>DroYak_CAF1 91939 78 - 1
GCCCAUUGGGCUGGGCGAGUGGUCAAGUCAAGUCAGUUGGAGCAGAACAAUUGAAAUAAUUGCCCAAAAUGUGGGUG-G--------------------
((((((.....(((((((.(.....).))...(((((((........))))))).......)))))....)))))).-.-------------------- ( -25.80)
>DroAna_CAF1 86878 91 - 1
GCCCAUUGAGCUGG--GACUGGUCAA-----GUCAGUUGAAGCAGAACAAUUGAAAUAAUUGCCCAAAAUGUUGUCA-GAGGCAAAGACGGAGCAGUAG
.((((......)))--)((((.((..-----.(((((((........))))))).....(((((.....((....))-..))))).....)).)))).. ( -22.90)
>consensus
GCCCAUUGGGCUGG__GAGUGGUCAAGUCAAGUCAGUUGGAGCAGAACAAUUGAAAUAAUUGCCCAAAAUGUGGGUG_GAGCUACAGCUGGAGC_____
(((((((((((.....((....))........(((((((........))))))).......)))))....))))))....................... (-18.97 = -19.50 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:36 2006