| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,655,891 – 18,656,020 |
| Length | 129 |
| Max. P | 0.963990 |
| Location | 18,655,891 – 18,656,001 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 84.21 |
| Mean single sequence MFE | -28.32 |
| Consensus MFE | -19.97 |
| Energy contribution | -19.80 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.573974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18655891 110 - 27905053 GAGGAGCGAUAAAAA-CCAAAGG-A-GAACUUCGCACAGGAAGUCGCUAUGG-GGCGAAAAUCUGAUGCGGAAAUCGAAAUUUGUUAAAUGGAGCAAUCGAUGGAUGGCG-CUGA-- ....((((.......-((.....-.-....((((((((((...(((((....-)))))...)))).)))))).(((((...(((((......))))))))))))....))-))..-- ( -30.00) >DroVir_CAF1 223661 112 - 1 GAUAAGCAAUAAAAG-CAUGAAC-A-AAACUUUGCACAGGAAGUCGCUAUGG-GGCGAAAAUCUGAAGCGGAAAUCGAAAUUUGUUAAAUGGAGCAAUCGAUGAAUAGCG-UUGGAU ......((((....(-((.....-.-......))).((((...(((((....-)))))...))))..((....(((((...(((((......)))))))))).....)))-)))... ( -22.80) >DroGri_CAF1 85322 114 - 1 GAUCAGCAAUAAAAG-CGGAGGCAA-AAACUUUCCACAGGAAGUUGCCAUGG-GGCGAAAAUCUGAAGCGGAAAUCGAAAUUUGUUAAAUGGAGCAAUCGAUGAAUCGCGCUUGGCC .....((.....(((-((((((...-....))))).((((...(((((....-)))))...))))..((((..(((((...(((((......))))))))))...)))))))).)). ( -30.60) >DroWil_CAF1 83318 109 - 1 GAAAAGCAAUAAAAAGCCAAAGA-A-GAAGUUCGCACAGGAAGUCGCUAUGG-GGCGAAAAUCUGAUGCGGAAAUCGAAAUUUGUUAAAUGGAGCAAUCGAUGGAUGGCU-CU---- ..............(((((....-.-....((((((((((...(((((....-)))))...)))).)))))).(((((...(((((......))))))))))...)))))-..---- ( -31.00) >DroMoj_CAF1 93636 112 - 1 GAUAAGCAAUAAAAG-CGUUAGG-A-AAACUUCGCGCAGGAAAUCGCUAUGG-GGCGAAAAUCUGUAGCGGAAAUCGAAAUUUGUUAAAUGGAGCAAUCGAUGAAUUGCG-UUGGCU .....(((((....(-(((.(((-.-...))).))))......(((((((((-(.......))))))))))..(((((...(((((......))))))))))..))))).-...... ( -28.50) >DroPer_CAF1 97379 109 - 1 GGAAAGCAAUAAAAG-CUUAAGG-AAAAACUUCGCACCGGAAGUCGCUAUGGGGGCGAAAAUCUGAUGCGGAAAUCGAAAUUUGUUAAAUGGAGCAAUCGAUGGAUGGGG-C----- ...((((.......)-)))....-......((((((.((((..(((((.....)))))...)))).)))))).(((((...(((((......))))))))))........-.----- ( -27.00) >consensus GAUAAGCAAUAAAAG_CCUAAGG_A_AAACUUCGCACAGGAAGUCGCUAUGG_GGCGAAAAUCUGAAGCGGAAAUCGAAAUUUGUUAAAUGGAGCAAUCGAUGAAUGGCG_CUGG__ .....((.......................(((((...(((..(((((.....)))))...)))...))))).(((((...(((((......)))))))))).....))........ (-19.97 = -19.80 + -0.17)
| Location | 18,655,925 – 18,656,020 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 77.10 |
| Mean single sequence MFE | -19.29 |
| Consensus MFE | -12.78 |
| Energy contribution | -12.45 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.963990 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18655925 95 - 27905053 CGUGGGUGAAAAAAAAUAGGAGGAGCGAUAAAAACCAAAGG-A-GAACUUCGCACAGGAAGUCGCUAUGG-GGCGAAAAUCUGAUGCGGAAAUCGAAA ....(((..........................))).....-.-((..((((((((((...(((((....-)))))...)))).))))))..)).... ( -20.57) >DroVir_CAF1 223697 76 - 1 -------------------GAUAAGCAAUAAAAGCAUGAAC-A-AAACUUUGCACAGGAAGUCGCUAUGG-GGCGAAAAUCUGAAGCGGAAAUCGAAA -------------------(((..((.......(((.....-.-......))).((((...(((((....-)))))...))))..))....))).... ( -15.40) >DroGri_CAF1 85359 80 - 1 ----------------UGGGAUCAGCAAUAAAAGCGGAGGCAA-AAACUUUCCACAGGAAGUUGCCAUGG-GGCGAAAAUCUGAAGCGGAAAUCGAAA ----------------.((..((.((.........(((((...-....))))).((((...(((((....-)))))...))))..)).))..)).... ( -17.70) >DroMoj_CAF1 93672 80 - 1 ---------------GUGGGAUAAGCAAUAAAAGCGUUAGG-A-AAACUUCGCGCAGGAAAUCGCUAUGG-GGCGAAAAUCUGUAGCGGAAAUCGAAA ---------------....(((...........((((.(((-.-...))).))))......(((((((((-(.......))))))))))..))).... ( -18.80) >DroAna_CAF1 81583 79 - 1 ----------------UAGGAGAAGCGAUAAAAACCAAAGG-A-AAACUUCGCACAGGAAGUCGCUAUGG-GGCGAAAAUCUGAUGCGGAAAUCGAAA ----------------.........((((.....((...))-.-....((((((((((...(((((....-)))))...)))).)))))).))))... ( -20.50) >DroPer_CAF1 97410 89 - 1 CCUGGGGGG--------GGGGAAAGCAAUAAAAGCUUAAGG-AAAAACUUCGCACCGGAAGUCGCUAUGGGGGCGAAAAUCUGAUGCGGAAAUCGAAA (((......--------)))((((((.......))))....-......((((((.((((..(((((.....)))))...)))).))))))..)).... ( -22.80) >consensus ________________UGGGAUAAGCAAUAAAAGCCUAAGG_A_AAACUUCGCACAGGAAGUCGCUAUGG_GGCGAAAAUCUGAAGCGGAAAUCGAAA ................................................(((((...(((..(((((.....)))))...)))...)))))........ (-12.78 = -12.45 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:35 2006