Locus 7062

Sequence ID 3R_DroMel_CAF1
Location 18,655,717 – 18,655,829
Length 112
Max. P 0.991909
window11433

overview

Window 3

Location 18,655,717 – 18,655,829
Length 112
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 73.79
Mean single sequence MFE -27.08
Consensus MFE -15.79
Energy contribution -15.57
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -2.43
Structure conservation index 0.58
SVM decision value 2.30
SVM RNA-class probability 0.991909
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18655717 112 + 27905053
CGCCCACUUUUUAUUGUUAUUGUUUGUAAUUGAAAUGGUGCAAACGUACAAGCGAUAAAAUGUAAAACCAAACGCAAGUC--UCGACUCCGGAUUUUCUCUGGGGAUGUGGGGC
..(((((.((((((..((((((((((((.(((........)))...))))))))))))...))))))....((....)).--....(((((((.....)))))))..))))).. ( -34.40)
>DroVir_CAF1 223551 85 + 1
CGUACACAUUUUAUUGUUAUUGUUUGUAAUUGAAAUGGUGCAAACGUACAAGCGAUAAAAUGUAAAACCAAACUGUGGAC--------------U-----UG----CG------
((((.(((((((((((((..((((((((..........))))))))....)))))))))))))....(((.....)))..--------------.-----))----))------ ( -21.10)
>DroGri_CAF1 85202 85 + 1
CGUCCACAUUUUAUUGUUAUUGUUUGUAAUUGAAAUGGUGCAAACGUACAAGCGAUAAAAUGUAAAACCAAACUGUGGAA--------------U-----UG----UG------
..((((((((((((..((((((((((((.(((........)))...))))))))))))...))))))......)))))).--------------.-----..----..------ ( -22.00)
>DroMoj_CAF1 93496 99 + 1
CGUCCACAUUUUACUGUUAUUGUUUGUAAUUGAAAUGGUGCAAACGUACAAGCGAUAAAAUGUAAAACCGAACUGCGAAGAGGCGGCUGGCGGCU-----GG----CG------
((.(((..((((((..((((((((((((.(((........)))...))))))))))))...))))))(((..((((......))))....))).)-----))----))------ ( -27.30)
>DroAna_CAF1 81403 106 + 1
CGCCCGGUUUUUAUUGUUAUUGUUUGUAAUUGAAAUGGUGCAAACGUACAAGCGAUAAAAUGUAAAAUCAAACUCGAUUC--UCGACUC------UUCCAAGGGAGCGACGAGC
.....((((((.....((((((((((((.(((........)))...)))))))))))).....))))))...((((....--(((.(((------(......))))))))))). ( -26.70)
>DroPer_CAF1 97271 94 + 1
CACCCACUUUUUACUGUUAUUGUUUGUAAUUGAAAUGGUGCAAACGUACAAGCGAUAAAAUGUAAAACCAAAUGCAGGAC--UC------------UCCCUG----UGUGGG--
..(((((.((((((..((((((((((((.(((........)))...))))))))))))...))))))......(((((..--..------------..))))----))))))-- ( -31.00)
>consensus
CGCCCACAUUUUAUUGUUAUUGUUUGUAAUUGAAAUGGUGCAAACGUACAAGCGAUAAAAUGUAAAACCAAACUCAGGAC__UC__________U_____UG____CG______
........((((((..((((((((((((.(((........)))...))))))))))))...))))))............................................... (-15.79 = -15.57 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:34 2006