Locus 7061

Sequence ID 3R_DroMel_CAF1
Location 18,654,049 – 18,654,161
Length 112
Max. P 0.621827
window11432

overview

Window 2

Location 18,654,049 – 18,654,161
Length 112
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 87.81
Mean single sequence MFE -34.86
Consensus MFE -29.22
Energy contribution -29.50
Covariance contribution 0.28
Combinations/Pair 1.13
Mean z-score -1.45
Structure conservation index 0.84
SVM decision value 0.18
SVM RNA-class probability 0.621827
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18654049 112 + 27905053
GAAUGG-----UUUGGGUUAGUUUCUCGAAGGAGCUGUGCUGCAAGGUGAGGCAUGUUCAAUUACUUUGAACAACUUCGAACAGCGGCAAGGCCAUGUCUGUGGCAAAUGCAAAGUG
....(.-----((((.(((((((((.....)))))).((((((....(((((..(((((((.....))))))).)))))....))))))..(((((....))))).))).)))).). ( -35.70)
>DroSec_CAF1 84166 112 + 1
GUAUGG-----GUUGGGUUGGUUUCUCGAAGGAGCUGCGCUGCAAGGUGAGGCAUGUUCAAUUACUUUGAACAACUUCGAACAGCGGCAAGGCCAUGUCUGUGGCAAAUGCAAAAUG
......-----.....((((.....((((((..(((.((((....)))).))).(((((((.....))))))).)))))).)))).(((..(((((....)))))...)))...... ( -35.50)
>DroSim_CAF1 81791 117 + 1
GAAUGGAGUGGGUUGGUCUGGUUUCUCGAAGGAGCUGCGCUGCAAGGUGAGGCAUGUUCAAUUACUUUGAACAACUUCGAACAGCGGCAAGGCCAUGUCUGUGGCAAAUGCAAAGUG
...((..(..(..((((((.((..(((....)))..))(((((....(((((..(((((((.....))))))).)))))....))))).))))))...)..)..))........... ( -36.40)
>DroEre_CAF1 86625 112 + 1
GAAUGG-----GUUGGGUUGGUUUCUCGAAGGAGCUGCGCUGCAAGGUGAGGCAUGUUCAAUUACUUUGAACAACUUCGAACAGCGGCAAGGCCAUGUCUGUGGCAAAUGCAAAGUG
......-----.....((((.....((((((..(((.((((....)))).))).(((((((.....))))))).)))))).)))).(((..(((((....)))))...)))...... ( -35.50)
>DroAna_CAF1 80212 98 + 1
-----------------UUGG--CCUCGAAGGCUAUUUGCAGCAAGGUGAGCCGUGUUCAAUUACUUUGAACAACUUCAAACAGCGGCAAGGCCAUGUCUGUGGCAAAUGCAAAGUG
-----------------.(((--((.....)))))((((((((....((((...(((((((.....)))))))..))))....))......(((((....)))))...))))))... ( -31.20)
>consensus
GAAUGG_____GUUGGGUUGGUUUCUCGAAGGAGCUGCGCUGCAAGGUGAGGCAUGUUCAAUUACUUUGAACAACUUCGAACAGCGGCAAGGCCAUGUCUGUGGCAAAUGCAAAGUG
...................((((((.....)))))).(((((.....(((((..(((((((.....))))))).)))))..)))))(((..(((((....)))))...)))...... (-29.22 = -29.50 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:33 2006