Locus 7060

Sequence ID 3R_DroMel_CAF1
Location 18,651,172 – 18,651,288
Length 116
Max. P 0.622471
window11431

overview

Window 1

Location 18,651,172 – 18,651,288
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 93.53
Mean single sequence MFE -41.22
Consensus MFE -35.08
Energy contribution -35.36
Covariance contribution 0.28
Combinations/Pair 1.03
Mean z-score -1.30
Structure conservation index 0.85
SVM decision value 0.18
SVM RNA-class probability 0.622471
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18651172 116 - 27905053
CCAAGGGUCCUUAGUUUGCCAGGACAACACAUACCAGGCCAAUCCGGCGCACUCAUGCUGGUGCUGCGGCUUUAUGGUCAGGUGUCUCAAGAUGCAUGCCCCUUUUGGGGCAACUC
......(((((.........))))).....(((((.(((((..(((..(((((......)))))..))).....))))).)))))...........((((((....)))))).... ( -37.90)
>DroSec_CAF1 80477 116 - 1
GCAAGGGUCCUUAGUUUGCCAGGACAACACAUGCCAGGCCAAUCCGGCGCACUCAUGCUGGUGCUGCGGCUUUAUGGUCAGGUGUCUCAAGAUGCAUGCCCCUUUUGGGGCAACUC
(((...(((((.........))))).((((.(((((((((...((((((......))))))......))))...))).)).)))).......))).((((((....)))))).... ( -41.10)
>DroSim_CAF1 77544 116 - 1
GCAAGGGUCCUUAGUUUGCCAGGACAACACAUGCCAGGCCAAUCCGGCGCACUCAUGCUGGUGCUGCGGCUUUAUGGUCAGGUGUCUCAAGAUGCAUGCCCCUUUUGGGGCAACUC
(((...(((((.........))))).((((.(((((((((...((((((......))))))......))))...))).)).)))).......))).((((((....)))))).... ( -41.10)
>DroEre_CAF1 78690 116 - 1
CGGAGAGUCCUUAGUCCGCAAGGACAACACAAAGCAGGCCAAUCCAGCGCACUCAUGCUGGUGCUUUGGCUUUAUGGUCAGGUGUCUCAAGAUGCAUGCCCCUUUUGGGGCAACUC
..((((..(((..((((....))))..((.(((((.(((....((((((......)))))).)))...))))).))...)))..))))........((((((....)))))).... ( -46.80)
>DroYak_CAF1 80011 116 - 1
CCAAGAGUCCUUAGUUCGCCAGGACAACACAUAGCAGGCCAAUUCCGCGCACUCAUGCUGCUGCUGUGGCUUUAUGGUCAGGUGUCUCAAGAUGCAUGCCCCUUUUGGGGCAACUC
((((((((.....((((....))))....((((((((((.......))(((....)))..))))))))))))).)))....(((((....))))).((((((....)))))).... ( -39.20)
>consensus
CCAAGGGUCCUUAGUUUGCCAGGACAACACAUACCAGGCCAAUCCGGCGCACUCAUGCUGGUGCUGCGGCUUUAUGGUCAGGUGUCUCAAGAUGCAUGCCCCUUUUGGGGCAACUC
......(((((.........)))))...........(((((..((((((......)))))).((....))....)))))..(((((....))))).((((((....)))))).... (-35.08 = -35.36 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:32 2006